Table 2 List of differentially expressed proteins among the GMO and the non-GM soybean variety in statistical analysis #ii
Protein ID | Protein name (Uniprot) | FC | log2(FC) | p.adjusted | Gene ontology (biological process) | Gene ontology (molecular function) | |
|---|---|---|---|---|---|---|---|
1 | A0A0R0I9D1;I1MQJ9 | eRF1_1 domain-containing protein | 0.11235 | − 3.154 | 0.0033152 | Cytoplasmic translational termination [GO:0002184]; regulation of growth [GO:0040008] | Sequence-specific mRNA binding [GO:1990825]; translation release factor activity, codon specific [GO:0016149] |
2 | I1K5D3;I1KQJ6 | Eukaryotic translation initiation factor 3 subunit C (eIF3c) (Eukaryotic translation initiation factor 3 subunit 8) (eIF3 p110) | 0.10624 | − 3.2346 | 0.0033406 | Formation of cytoplasmic translation initiation complex [GO:0001732]; translational initiation [GO:0006413] | Translation initiation factor activity [GO:0003743]; translation initiation factor binding [GO:0031369] |
3 | A0A0R0EBE6 | Carboxypeptidase (EC 3.4.16.-) | 0.11348 | − 3.1395 | 0.0033406 | Serine-type carboxypeptidase activity [GO:0004185] | |
4 | I1M5W5 | Matrin-type domain-containing protein | 0.12941 | − 2.95 | 0.0033406 | Spliceosomal complex assembly [GO:0000245] | nucleic acid binding [GO:0003676]; zinc ion binding [GO:0008270] |
5 | K7N4K5;I1LCG9 | Uncharacterized protein | 0.14227 | − 2.8133 | 0.0033406 | mRNA splicing, via spliceosome [GO:0000398] | mRNA binding [GO:0003729] |
6 | I1LJF7 | MFS domain-containing protein | 0.14433 | − 2.7926 | 0.0033406 | Carbohydrate:proton symporter activity [GO:0005351] | |
7 | C6TML4 | Hydrolase_4 domain-containing protein | 0.14609 | − 2.7751 | 0.0033406 | lipase activity [GO:0016298] | |
8 | A0A0R0F137 | Ribosomal_L18e/L15P domain-containing protein | 0.11698 | − 3.0956 | 0.0041719 | Translation [GO:0006412] | mRNA binding [GO:0003729]; RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735] |
9 | K7N502;A0A0R0ENA0;K7LJV1 | TRAM domain-containing protein | 0.11998 | − 3.0592 | 0.0041719 | RNA processing [GO:0006396] | RNA binding [GO:0003723] |
10 | C6TMK2;I1MI73;I1MI72 | 2,4-Dienoyl-CoA reductase ((3E)-enoyl-CoA-producing) (EC 1.3.1.124) | 0.099955 | − 3.3226 | 0.005094 | fatty acid catabolic process [GO:0009062] | 2,4-Dienoyl-CoA reductase (NADPH) activity [GO:0008670] |
11 | I1MWX3;A0A0R0GNM9 | Uncharacterized protein | 0.14721 | − 2.764 | 0.0069169 | ||
12 | I1LRP6;K7KYB8;A0A0R0JXB5 | PDZ domain-containing protein | 0.16292 | − 2.6178 | 0.0093213 | Metalloendopeptidase activity [GO:0004222] | |
13 | I1JE93 | Ribosomal RNA-processing protein 40 | 0.11372 | − 3.364 | 0.010422 | CUT catabolic process [GO:0071034]; exonucleolytic catabolism of deadenylated mRNA [GO:0043928]; exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [GO:0000467]; nuclear polyadenylation-dependent rRNA catabolic process [GO:0071035]; nuclear polyadenylation-dependent tRNA catabolic process [GO:0071038]; nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription [GO:0071049]; nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [GO:0034427]; polyadenylation-dependent snoRNA 3'-end processing [GO:0071051]; U4 snRNA 3'-end processing [GO:0034475] | RNA binding [GO:0003723] |
14 | A0A0R0EYQ2;K7MR27;K7MR26;K7MR28;A0A0R0I6E6;I1L2F5;A0A0R0IFH3;A0A0R0I6G1;I1L2F4;A0A0R0ID51 | FHA domain-containing protein | 0.13694 | − 2.8684 | 0.010422 | ||
15 | I1KG57 | O-fucosyltransferase family protein | 0.14274 | − 2.8085 | 0.010422 | Fucose metabolic process [GO:0006004] | transferase activity [GO:0016740] |
16 | K7MP06;K7M8L9;I1MYC5;A0A0R0ETU0 | RNA helicase (EC 3.6.4.13) | 0.15609 | − 2.6796 | 0.010422 | Spliceosomal complex disassembly [GO:0000390] | ATP binding [GO:0005524]; ATP hydrolysis activity [GO:0016887]; RNA binding [GO:0003723]; RNA helicase activity [GO:0003724] |
17 | A0A0R0JFR0 | Chal_sti_synt_N domain-containing protein | 4.5469 | 2.1849 | 0.010422 | Polyketide biosynthetic process [GO:0030639] | Acyltransferase activity, transferring groups other than amino-acyl groups [GO:0016747] |
18 | I1NIQ4;K7N519 | Uncharacterized protein | 0.11847 | − 3.0774 | 0.011153 | Intracellular protein transport [GO:0006886]; protein transport by the Tat complex [GO:0043953] | |
19 | A0A0R0H3E6;A0A0R0H303;I1LR08 | V-type proton ATPase subunit a | 0.15718 | − 2.6695 | 0.01287 | Proton transmembrane transporter activity [GO:0015078] | |
20 | I1JBW7 | ZnMc domain-containing protein | 0.031519 | − 4.9876 | 0.013019 | Collagen catabolic process [GO:0030574]; extracellular matrix organization [GO:0030198] | Metalloendopeptidase activity [GO:0004222]; zinc ion binding [GO:0008270] |
21 | A0A368UIA9 | Uncharacterized protein | 0.035507 | − 4.8157 | 0.013019 | Serine-type endopeptidase activity [GO:0004252] | |
22 | A0A0R0FVM5 | Aspartate kinase (EC 2.7.2.4) | 0.13504 | − 2.8886 | 0.013019 | Homoserine biosynthetic process [GO:0009090]; lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088] | aspartate kinase activity [GO:0004072]; ATP binding [GO:0005524] |
23 | I1JTZ7 | Uncharacterized protein | 0.15577 | − 2.6825 | 0.013019 | Lipid biosynthetic process [GO:0008610] | |
24 | H9TN50 | Expansin B protein | 0.19189 | − 2.3816 | 0.013019 | Sexual reproduction [GO:0019953]; syncytium formation [GO:0006949] | |
25 | I1N0Z5;C6THR1;I1KXZ9;A0A0R0J3C7 | ECH_2 domain-containing protein | 1.3518 | 0.43483 | 0.013019 | 3-Hydroxyisobutyryl-CoA hydrolase activity [GO:0003860] | |
26 | I1M9X6 | BURP domain-containing protein | 0.18809 | − 2.4105 | 0.014827 | ||
27 | C6TCJ7 | Uncharacterized protein | 0.15478 | − 2.6917 | 0.015882 | SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition [GO:0006617] | 7S RNA binding [GO:0008312] |
28 | K7LKW9;K7N3W6;I1NH16 | Deubiquitinating enzyme MINDY-3 (EC 3.4.19.12) | 0.11065 | − 3.1759 | 0.016262 | Lys48-specific deubiquitinase activity [GO:1990380]; thiol-dependent deubiquitinase [GO:0004843] | |
29 | K7MXN7;I1ML93 | Uncharacterized protein | 0.14987 | − 2.7382 | 0.016262 | ||
30 | A0A0R0EKI3 | Uncharacterized protein | 0.16313 | − 2.6159 | 0.021712 | ||
31 | I1J4Z0;I1L4T1 | Exostosin domain-containing protein | 0.168 | − 2.5734 | 0.022036 | Protein glycosylation [GO:0006486] | Glycosyltransferase activity [GO:0016757] |
32 | I1KQH7;I1KQH9;I1KQI0 | Uncharacterized protein | 0.13934 | − 2.8434 | 0.023391 | mRNA processing [GO:0006397]; RNA splicing [GO:0008380] | |
33 | Q84ZV1 | Disease-resistance protein (R 9 protein) | 1.6868 | 0.75431 | 0.023795 | Signal transduction [GO:0007165] | Calcium ion binding [GO:0005509]; NAD + nucleosidase activity [GO:0003953] |
34 | I1KJJ3;A0A0R0J9U8 | Patatin (EC 3.1.1.-) | 0.5554 | − 0.8484 | 0.024191 | Lipid catabolic process [GO:0016042] | Acylglycerol lipase activity [GO:0047372]; phospholipase activity [GO:0004620] |
35 | A0A0R0GB30 | Uncharacterized protein | 0.16619 | − 2.5891 | 0.024617 | Proteolysis involved in cellular protein catabolic process [GO:0051603] | Cysteine-type endopeptidase activity [GO:0004197] |
36 | I1LNY2;I1L5L1;K7MDE9;A0A0R0I109 | Ribosomal protein | 0.6477 | − 0.6266 | 0.025515 | Maturation of LSU-rRNA [GO:0000470]; translation [GO:0006412] | RNA binding [GO:0003723]; rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735] |
37 | I1KL63 | Glycosyltransferase (EC 2.4.1.-) | 1.6272 | 0.70238 | 0.025542 | UDP-glycosyltransferase activity [GO:0008194] | |
38 | I1LQ64;I1LQ65;A0A0R0H152 | Uncharacterized protein | 0.70714 | − 0.49993 | 0.025804 | Dimethylallyl diphosphate biosynthetic process [GO:0050992]; isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway [GO:0019288] | 4-Hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity [GO:0051745]; 4 iron, 4 sulfur cluster binding [GO:0051539]; metal ion binding [GO:0046872] |
39 | K7KLL1;I1KBC8 | Uncharacterized protein | 0.17673 | − 2.5004 | 0.027621 | ||
40 | I1KIY3 | 40S ribosomal protein S7 | 0.3182 | − 1.652 | 0.027621 | Ribosomal small subunit biogenesis [GO:0042274]; rRNA processing [GO:0006364]; translation [GO:0006412] | Structural constituent of ribosome [GO:0003735] |
41 | I1KA18;A0A0R0JF06 | Acetyl-CoA carboxylase (EC 6.4.1.2) | 1.4351 | 0.52118 | 0.027621 | Fatty acid biosynthetic process [GO:0006633]; malonyl-CoA biosynthetic process [GO:2001295] | Acetyl-CoA carboxylase activity [GO:0003989]; ATP binding [GO:0005524]; metal ion binding [GO:0046872] |
42 | C6TFY0 | Uncharacterized protein | 0.71744 | − 0.47908 | 0.027621 | Translation [GO:0006412] | RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735] |
43 | Q2PMP8 | 50S ribosomal protein L16, chloroplastic | 0.71861 | − 0.47673 | 0.027621 | Mitochondrial translation [GO:0032543] | rRNA binding [GO:0019843]; structural constituent of ribosome [GO:0003735] |
44 | I1JPP3;K7MRG3;A0A0R0ITW3 | Uncharacterized protein | 1.2806 | 0.35681 | 0.027621 | Autophagosome maturation [GO:0097352]; ER-associated misfolded protein catabolic process [GO:0071712]; mitotic spindle disassembly [GO:0051228]; retrograde protein transport, ER to cytosol [GO:0030970]; ubiquitin-dependent ERAD pathway [GO:0030433] | ATP binding [GO:0005524]; ATP hydrolysis activity [GO:0016887]; polyubiquitin modification-dependent protein binding [GO:0031593] |
45 | I1KVP9;A0A0R0FGA3 | Uncharacterized protein | 1.1859 | 0.24594 | 0.027621 | ||
46 | A0A0R0I9M4;I1L417;I1L416;A0A0R0IHL7;K7KRD7 | Annexin | 1.4558 | 0.54185 | 0.02869 | Response to stress [GO:0006950] | Calcium-dependent phospholipid binding [GO:0005544]; calcium ion binding [GO:0005509] |
47 | A0A368UJV7;I1JXI1;A0A368UID7;A0A368UIA6 | Uncharacterized protein | 0.23964 | − 2.061 | 0.029791 | ||
48 | I1L171 | Uncharacterized protein | 1.2162 | 0.28237 | 0.030006 | ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; mRNA binding [GO:0003729]; RNA binding [GO:0003723]; RNA helicase activity [GO:0003724] | |
49 | I1KWF3;A0A0R0IX71 | Endo-1,3(4)-beta-glucanase (EC 3.2.1.6) | 1.9221 | 0.94266 | 0.030422 | Metabolic process [GO:0008152] | Beta-glucosidase activity [GO:0008422]; glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group [GO:0052861]; glucan endo-1,4-beta-glucanase activity, C-3 substituted reducing group [GO:0052862] |
50 | E3W9C1;A0A0R0ERR6 | Protein disulfide-isomerase (EC 5.3.4.1) | 1.2844 | 0.36108 | 0.032384 | protein disulfide isomerase activity [GO:0003756] | |
51 | C6TA28;K7N1I9;A0A0R0GQL8 | Nucleoside diphosphate kinase (EC 2.7.4.6) | 4.3713 | 2.1281 | 0.032453 | CTP biosynthetic process [GO:0006241]; GTP biosynthetic process [GO:0006183]; UTP biosynthetic process [GO:0006228] | ATP binding [GO:0005524]; nucleoside diphosphate kinase activity [GO:0004550] |
52 | A0A0R0HG00;A0A0R0HHN9;A0A0R0HLL3;A0A0R0H9A9;A0A0R0H9D4;I1M2X3 | Protein kinase domain-containing protein | 2.3078 | 1.2065 | 0.033657 | ATP binding [GO:0005524]; protein serine/threonine/tyrosine kinase activity [GO:0004712]; protein serine/threonine kinase activity [GO:0004674]; protein serine kinase activity [GO:0106310] | |
53 | I1KSR4;A0A0R0IL12;A0A0R0K4U1;I1K4A1;A0A0R0JWR6;A0A0R0JWY2;A0A0R0K2I7;A0A0R0JWR2;K7KQP4 | Uncharacterized protein | 1.5259 | 0.60968 | 0.034514 | ER-associated misfolded protein catabolic process [GO:0071712]; protein N-linked glycosylation via asparagine [GO:0018279] | UDP-glucose:glycoprotein glucosyltransferase activity [GO:0003980]; unfolded protein binding [GO:0051082] |
54 | I1JUD5 | Uncharacterized protein | 1.507 | 0.59165 | 0.034514 | ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; RNA binding [GO:0003723]; RNA helicase activity [GO:0003724] | |
55 | I1KNN1;I1MQW2 | Uncharacterized protein | 1.3958 | 0.48107 | 0.034514 | Ribosomal small subunit assembly [GO:0000028]; translation [GO:0006412] | RNA binding [GO:0003723]; structural constituent of ribosome [GO:0003735] |
56 | I1JN31;A0A0R0KQC7;K7MY41 | Carboxypeptidase (EC 3.4.16.-) | 5.2164 | 2.3831 | 0.034854 | Serine-type carboxypeptidase activity [GO:0004185] | |
57 | I1JNS6 | Probable aspartic proteinase GIP1 (EC 3.4.23.-) (Glucanase inhibitor protein 1) (GmGIP1) | 0.65033 | -0.62076 | 0.037281 | Defense response [GO:0006952] | Aspartic-type endopeptidase activity [GO:0004190] |
58 | I1L1U5;I1L1U4;I1L1U2;I1MHJ8;I1MHJ6 | Sucrose synthase (EC 2.4.1.13) | 4.6113 | 2.2052 | 0.039612 | Sucrose metabolic process [GO:0005985] | Sucrose synthase activity [GO:0016157] |
59 | I1NA94;A0A0R0EPL0;K7MZ15 | Uncharacterized protein | 1.6485 | 0.72119 | 0.040167 | Lysine biosynthetic process via diaminopimelate [GO:0009089] | Diaminopimelate decarboxylase activity [GO:0008836] |
60 | C6TB56 | PKS_ER domain-containing protein | 2.1187 | 1.0832 | 0.045368 | Oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [GO:0016616]; zinc ion binding [GO:0008270] | |
61 | I1KUN7;I1LTF6;I1KBS6;I1JXV4;Q43466;I1K552;I1MV85;I1MV84;I1K0W9;I1KSY9;K7KQW3;A0A0R0JX61;A0A0R0K6Z1;Q43465;I1J9Q1 | Protein kinase domain-containing protein | 1.2955 | 0.37348 | 0.045682 | Intracellular signal transduction [GO:0035556]; protein phosphorylation [GO:0006468] | ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] |
62 | C6T8R3;I1L5M3;I1L5M4;I1L5M2 | Uncharacterized protein | 5.641 | 2.496 | 0.046811 | ||
63 | A0A0R0H4Q8;K7M167;A0A0R0H1N2;I1M1L8;K7MAF1 | Uncharacterized protein | 0.213 | − 2.2311 | 0.046811 | Response to symbiotic fungus [GO:0009610] | Serine-type endopeptidase activity [GO:0004252] |
64 | I1L7M8;A0A0R0KXZ7;K7K5V4;K7KDZ7 | Long-chain fatty acid CoA ligase (EC 6.2.1.3) | 3.1029 | 1.6336 | 0.046811 | cutin biosynthetic process [GO:0010143]; wax biosynthetic process [GO:0010025] | Long-chain fatty acid CoA ligase activity [GO:0004467] |
65 | I1KV03;I1KGH4;I1KGH3 | Uncharacterized protein | 29.835 | 1.577 | 0.046811 | Hydrolase activity, acting on ester bonds [GO:0016788] | |
66 | I1JBW8;A0A0R0KY07 | ZnMc domain-containing protein | 2.9738 | 1.5723 | 0.046811 | Collagen catabolic process [GO:0030574]; extracellular matrix organization [GO:0030198] | metalloendopeptidase activity [GO:0004222]; zinc ion binding [GO:0008270] |
67 | I1M3I8;I1LUR0 | Uncharacterized protein | 0.49454 | − 1.0158 | 0.046811 | ||
68 | I1LTG9;A0A0R0GXL3;I1L2Q0;I1LKD9 | Protein transport protein Sec61 subunit beta | 1.5167 | 0.6009 | 0.046811 | Posttranslational protein targeting to membrane, translocation [GO:0031204]; SRP-dependent cotranslational protein targeting to membrane, translocation [GO:0006616] | |
69 | I1JPL2;A0A0R0JTD7 | J domain-containing protein | 1.5082 | 0.59287 | 0.046811 | ||
70 | I1NAV4 | Uncharacterized protein | 0.68786 | − 0.53981 | 0.046811 | Chloroplast rRNA processing [GO:1901259] | mRNA binding [GO:0003729] |
71 | I1KYT6;I1N048 | RuvB-like helicase (EC 3.6.4.12) | 1.4362 | 0.52223 | 0.046811 | Box C/D snoRNP assembly [GO:0000492]; chromatin remodeling [GO:0006338]; histone acetylation [GO:0016573]; regulation of transcription by RNA polymerase II [GO:0006357] | 5'-3' DNA helicase activity [GO:0043139]; ATP binding [GO:0005524]; ATP hydrolysis activity [GO:0016887]; DNA helicase activity [GO:0003678] |
72 | I1MJU7;A0A0R0HS21 | Uncharacterized protein | 0.701 | − 0.51252 | 0.046811 | Protein folding [GO:0006457] | ATP binding [GO:0005524]; ATP hydrolysis activity [GO:0016887]; unfolded protein binding [GO:0051082] |
73 | C6TJD3 | Uncharacterized protein | 1.3455 | 0.42817 | 0.046811 | Protein phosphorylation [GO:0001934]; rescue of stalled ribosome [GO:0072344] | Protein kinase C binding [GO:0005080]; ribosome binding [GO:0043022] |
74 | I1MW40 | Uncharacterized protein | 1.2156 | 0.28167 | 0.046811 | Mitochondrial proton-transporting ATP synthase complex assembly [GO:0033615] | |
75 | I1L1K7 | Uncharacterized protein | 1.2113 | 0.27653 | 0.046811 | Cytoplasmic translational initiation [GO:0002183] | ATP binding [GO:0005524]; hydrolase activity [GO:0016787]; RNA helicase activity [GO:0003724]; translation initiation factor activity [GO:0003743] |
76 | I1N806;I1MLA2;I1N807;I1MLA3 | Uncharacterized protein | 0.41395 | − 1.2725 | 0.048495 | ||
77 | I1MCW6;C6ZRU0;A0A0R0G434;K7M940;I1MCX0 | Protein kinase domain-containing protein | 1.818 | 0.86234 | 0.048495 | ATP binding [GO:0005524]; protein serine/threonine kinase activity [GO:0004674] | |
78 | I1LQ02;I1LQ03 | WBb225L1.16 protein | 1.1179 | 0.16078 | 0.048495 | Ribosome biogenesis [GO:0042254] | snoRNA binding [GO:0030515] |