Table 2 Examples of species contain seven types of gaps in BoLD
From: Gap analysis of DNA barcoding in ERMS reference libraries for ascidians and cnidarians
Taxon | Records with no data | Records with partial public data-no sequence available | Records with no public data | Records with sequences mined from genbank (containing gaps in sequence and/or no trace files | Records with more than one bin | Records containing no bin: truncated and partial sequences | Record with two sequences and two bins | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Ascidians | Cnidarians | Ascidians | Cnidarians | Ascidians | Cnidarians | Ascidians | Cnidarians | Ascidians | Cnidarians | Ascidians | Cnidarians | Ascidians | Cnidarians | |
Species | Molguloides vitrea | Edwardsia claparedii | Molgula oculata | Epizoanthus erdmanni | Molgula occidentalis | Epizoanthus incrustatus | Dendrodoa grossularia | Eunicella singularis | Botryllus schlosseri | Porpita porpita | Stolonica socialis | Abietinaria filicula | Didemnum fulgens | Kephyes ovata |
Records in BoLD | 4 | 1 | 5 | 7 | 7 | 9 | 4 | 7 | 577 | 14 | 1 | 6 | 2 | 2 |
No. of sequences in BoLD | 0 | 0 | 1 | 0 | 2 | 5 | 3 | 7 | 540 | 12 | 1 | 3 | 2 | 2 |
No. of barcodes | 0 | 0 | 1 | 0 | 0 | 5 | 2 | 7 | 531 | 12 | 1 | 2 | 2 | 2 |
No. of public barcodes | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 7 | 531 | 8 | 1 | 1 | 2 | 2 |
Mined from Genbank | 0 | 0 | 1 | 0 | 0 | 0 | 3 | 7 | 528 | 2 | 1 | 0 | 2 | 2 |
No. of Specimen Depositories | 0 | 0 | 0 | 0 | 0 | 2 | 1 | 0 | 8 | 2 | 0 | 2 | 0 | 0 |
Public bins | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 18 | 2 | 0 | 0 | 2 | 2 |