Table 1 Details of run statistics and data processing for library construction AG8025RR2, AG9045RR2 and near isogenic varieties
| Run statistics | AG8025RR2 | AG8025 conv | AG9045RR2 | AG9045 conv |
|---|---|---|---|---|
| Raw reads | 95.5 M | 91.7 M | 71.1 M | 73.1 M |
| Uniquely mapped reads | 71.7 M | 65.9 M | 37.6 M | 49 M |
| Repetitive sequences | 5.4 M | 5.2 M | 3.1 M | 3.6 M |
| Not aligned | 5.0 M | 6.1 M | 20.8 M | 2.8 M |
| Median insert size (nt) (from aligned paired end reads) | 107 | 128 | 165 | 159 |
