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Environmental Sciences Europe

Table 1 Details of run statistics and data processing for library construction AG8025RR2, AG9045RR2 and near isogenic varieties

From: Analysis of transcriptomic differences between NK603 maize and near-isogenic varieties using RNA sequencing and RT-qPCR

Run statistics

AG8025RR2

AG8025 conv

AG9045RR2

AG9045 conv

Raw reads

95.5 M

91.7 M

71.1 M

73.1 M

Uniquely mapped reads

71.7 M

65.9 M

37.6 M

49 M

Repetitive sequences

5.4 M

5.2 M

3.1 M

3.6 M

Not aligned

5.0 M

6.1 M

20.8 M

2.8 M

Median insert size (nt) (from aligned paired end reads)

107

128

165

159

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