Metagenomic screening of microbiomes identifies pathogen-enriched environments

Li, Xiaofang

doi:10.1186/s12302-019-0217-x

Environmental Sciences Europe

Table 1 General information regarding the metagenomes retrieved from the MG-RAST server

From: Metagenomic screening of microbiomes identifies pathogen-enriched environments

MG-RAST ID	Abbreviation	bp count	Sequence count	Protein predicted	Material	Location	Country	Coordinates	Sequencing method
mgm4440281	MW281	35,439,683	334,386	227,038	Mine drainage	Soudan Mine	USA	47.819, − 92.243	454
mgm4443754	WW754	24,210,189	54,344	58,182	Waste water	Singapore	Singapore	1.332, 103.754	Unknown
mgm4443755	WW755	30,035,399	57,827	62,600	Waste water	Singapore	Singapore	1.332, 103.755	Unknown
mgm4443756	WW756	29,292,896	61,672	65,312	Waste water	Singapore	Singapore	1.332, 103.756	Unknown
mgm4461675	FW675	156,809,137	389,864	258,015	Well water	Lashkardi village	Bangladesh	23.744, 90.606	454
mgm4507016	F016	163,648,718	227,551	250,347	Feces	Bologna	Italy	44.495, 11.343	Illumina
mgm4510939	FW939	76,571,419	97,768	106,497	Surface water	Minnesota	USA	43.000, − 91.000	Illumina
mgm4510941	FW941	49,162,469	56,117	68,954	Surface water	Minnesota	USA	47.000, − 95.000	Illumina
mgm4510942	FW942	26,796,913	42,585	49,581	Surface water	Minnesota	USA	45.000, − 94.000	Illumina
mgm4510943	FW943	52,372,093	74,178	86,925	Surface water	Minnesota	USA	45.000, − 94.000	Illumina
mgm4510944	FW944	53,884,243	72,536	84,028	Surface water	Minnesota	USA	44.000, − 93.000	Illumina
mgm4510945	FW945	54,142,157	71,478	83,751	Surface water	Minnesota	USA	44.000, − 93.000	Illumina
mgm4510946	FW946	49,216,363	74,745	83,253	Surface water	Minnesota	USA	43.000, − 93.000	Illumina
mgm4514299	DS299	322,114,449	242,0832	1,323,378	Saline Desert Soil	Gujarat of India	India	23.7925, 71.008	Ion torrent
mgm4533707	OW707	134,833,790	668,257	508,217	Brackish Water	Columbia River coastal margin, OR & WA	USA	46.265, − 123.999	Illumina
mgm4543019	DS019	282,578,916	2,016,127	842,475	Saline Desert Soil	Gujarat of India	India	23.908, 70.538	Ion torrent
mgm4546371	WW371	84,424,005	907,785	803,682	Wastewater	Universiti Teknologi Malaysia	Malaysia	2.558, 104.642	Illumina
mgm4556493	AS493	162,926,938	1,613,138	1,332,131	Activated sludge	Unkown	China	31.550, 120.315	Illumina
mgm4556497	AS497	162,926,938	1,613,138	1,278,907	Activated sludge	Unkown	China	31.551, 120.316	Illumina
mgm4556505	AS505	257,249,323	2,547,023	1,737,663	Activated sludge	Unkown	China	31.552, 120.316	Illumina
mgm4556509	AS509	41,926,615	415,115	330,475	Activated sludge	Unkown	China	31.552, 120.317	Illumina
mgm4560423	F423	22,734,940	73,479	76,569	Feces	Lake Eyasi, Tanzania	Tanzania	− 3.635, 35.083	Illumina
mgm4568577	MW577	10,065,266	50,137	34,287	Mine water	Guangdong	China	24.503, 113.710	454
mgm4568580	MW580	12,911,442	62,018	36,461	Mine water	Guangdong	China	22.940, 112.050	454
mgm4589537	FW537	337,068,782	2,099,471	1,842,975	Surface water	West Virginia	USA	38.094, − 81.959	Illumina
mgm4620487	WW487	147,523,219	696,132	640,283	Wastewater	Guelph ON Canada	Canada	43.544, − 80.248	Illumina
mgm4620488	WW488	115,131,556	578,337	537,267	Wastewater	Guelph ON Canada	Canada	43.545, − 80.248	Illumina
mgm4620491	BS491	52,759,415	244,855	238,630	Biosolides	Guelph ON Canada	Canada	43.545, − 80.248	Illumina
mgm4623645	S645	1,541,232,730	15,259,730	11,587,259	Grassland soil	MPG_Ranch	USA	46.682, − 114.027	Illumina
mgm4626292	S292	711,577,500	7,115,775	5,992,554	Mountain soil	Taishan, Guangdong, China	China	22.110, 112.770	Illumina
mgm4629146	D146	1,693,361,056	9,120,345	3,914,215	Dust	Valencia	Spain	39.466, − 0.366	Illumina
mgm4654022	S022	830,740,317	4,484,452	4,110,948	Mountain soil	northern Galilee Mountains	Israel	33.000, 35.233	Illumina
mgm4654023	S023	711,633,780	3,762,792	3,377,414	Soil	Terra Rossa	Israel	31.700, 35.050	Illumina
mgm4654025	S025	698,042,789	3,808,872	3,379,500	Soil	Terra Rossa	Israel	31.700, 35.050	Illumina
mgm4654028	S028	572,066,482	3,129,422	2,798,806	Soil	Rendzina	Israel	31.033, 34.9	Illumina
mgm4679248	S248	603,919,746	3,365,512	1,361,948	Soil	Seoul	South Korea	37.460, 126.948	Illumina
mgm4679254	S254	689,019,062	3,688,750	1,966,121	Soil	Seoul	South Korea	37.459, 126.948	Illumina
mgm4695622	PFW622	114,430,648	111,889	148,833	Polluted fresh water	Nanjing, Jiangsu	China	32.600, 118.160	Illumina
mgm4695626	PFW626	86,732,360	78,621	111,489	Polluted fresh water	Nanjing, Jiangsu	China	32.400, 118.140	Illumina
mgm4697397	OS397	143,214,978	397,067	299,940	Organic Soil	Beijing	China	32.054, 118.763	Illumina
mgm4713197	OW197	60,417,678	272,918	140,195	Ocean water	Moorea	Pacific Ocean	17.538, − 149.829	Illumina
mgm4713202	OW202	89,726,117	442,552	254,139	Ocean water	Moorea	Pacific Ocean	17.538, − 149.829	Illumina
mgm4713205	OW205	106,474,596	476,363	235,777	Ocean water	Moorea	Pacific Ocean	17.538, − 149.829	Illumina
mgm4718752	F752	329,518,322	1,312,822	950,489	Feces	Upstate NY	USA	42.668, − 76.528	Illumina
mgm4719940	OW940	360,335,259	1,425,556	1,023,445	Ocean water	Irish Sea	Atlantic Ocean	53.225, − 4.159	Illumina
mgm4720261	FW261	35,487,527	6,896	33,743	Fresh Water	Galway	Ireland	53.276, − 9.060	Illumina
mgm4740560	MT560	739,577,348	7,322,548	6,102,709	Mine tailing	Kamloops	Canada	Unkown	Illumina
mgm4763187	F187	1,605,883,158	10,011,241	3,022,645	Feces	Palmerston North	New Zealand	− 40.355, 175.612	Illumina
mgm4763293	F293	1,621,471,323	9,844,890	3,391,304	Feces	Palmerston North	New Zealand	− 40.355, 175.612	Illumina
mgm4763371	F371	1,455,357,314	9,241,610	2,388,304	Feces	Palmerston North	New Zealand	− 40.355, 175.612	Illumina
mgm4770614	S614	55,225,990	132,807	144,038	Forest soil	Leningrad	Russia	59.549, 31.399	Illumina
mgm4779571	DS571	226,100,954	1,707,504	1,288,831	Desert soil	Kutch Desert	India	23.941, 70.188	Ion Torrent
mgm4779573	OW573	126,222,705	403,606	341,516	Saline water	Lake Tyrrel	Australia	− 35.32, 142.8	454
mgm4779575	OW575	46,134,631	135,959	130,566	Saline water	Albufera	Spain	39.332, − 0.352	454
mgm4779577	OW577	26,544,332	80,951	44,824	Saline water	Lake Tyrrel	Australia	− 35.320, 142.800	454
mgm4779580	OW580	10,257,469	80,645	60,571	Saline water	British_Columbia	Canada	49.730, − 119.874	Ion Torrent
mgm4779582	OW582	236,630,443	691,427	455,629	Saline water	Santa Pola	Spain	38.200, − 0.600	454
mgm4779585	SE585	69,798,594	852,769	442,408	Sediment	Yilgarn_Craton	Australia	− 33.426, 121.689	Illumina
mgm4779589	OW589	10,713,143	81,307	61,739	Saline water	British Columbia	Canada	49.730, − 119.874	Ion torrent
mgm4784118	SE118	294,673,007	263,221	400,006	Sediment	St. Francis Bay	South Africa	− 34.190, 24.704	Ion Torrent
mgm4784267	SE267	337,590,087	280,494	451,716	Sediment	Cape Recife	South Africa	− 34.045, 25.569	Ion Torrent
mgm4795328	FW328	1,263,293,418	5,301,996	2,970,195	Surface water	San Antonio	USA	29.424, − 98.493	Illumina
mgm4819059	S059	658,065,701	4,358,051	2,432,031	Forest soil	Lahti	Finland	60.971, 25.704	Illumina
mgm4819062	S062	1,197,697,874	7,931,774	6,478,848	Forest soil	Baltimore	USA	39.488, − 76.689	Illumina
mgm4819067	S067	771,429,857	5,108,807	3,703,810	Grassland soil	Potchefstroom	South Africa	− 26.701, 27.101	Illumina
mgm4819073	S073	730,894,511	4,840,361	3,946,449	Forest soil	Baltimore	USA	39.326, − 76.622	Illumina
N/A	SRS	532,850,584	1,632,914	1,408,943	Red Soil	Mt Isa	Australia	20.440, 139.300	Illumina
N/A	SRSP	433,386,397	1,338,665	1,081,822	Red soil polluted	Mt Isa	Australia	20.440, 139.300	Illumina
N/A	SSLS	507,124,889	1,552,234	1,413,889	Shrub land soil	Mt Isa	Australia	20.440, 139.300	Illumina

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