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Table 2 Sequences of primer pairs and corresponding amplicon sizes used in quantitative real-time PCR [11]

From: Toward understanding the impacts of sediment contamination on a native fish species: transcriptional effects, EROD activity, and biliary PAH metabolites

Transcript

Primer sequence (5′–3′)

Amplicon size (bp)

Cytochrome P450 1a (cyp1a)

F: TTCGGAGCCGGTTTCGACAC

R CCTCGAGGAGCGGCAGG

166

ATP-binding cassette transporter C9 (abcc9)

F: CAGGGATGCACACGACATC

R ACGGGAAGGACGGAAGAATG

199

Pyruvate carboxylase (pc)

F: GTAAAGGTGAAGCCAGGCCAG

R: TCCCCTTCCAGGCTGCTGTC

146

Glycogen phosphorylase liver isoform (pygl)

F: TGGCCAATCACAGGATCGTTA

R: TTCTCAATTGCCTCCACGTCA

184

Protein kinase c delta type (pkcd)

F: TCCAGTAACAGCAACAGTTGAGA

R: CCTGCTAGACATCTTGTTCATGC

200

Extracellular superoxide dismutase (sod)

F: GAGTTCGACAACACAATCTATGCCAC

R: CAGCCTTGACTGAGGTCTCC

212

Transferrin variant d (tfd)

F: GGCACACTGGCAAGTTTACAT

R: GGCTTTCAGGTGTCTTGCAG

198

β-Actin—reference gene (actb)

F: CCGTAAGGACTTGTATGCCAACAC

R: GGTGGGGCAATGATCTTGATC

132