Integration of omics analyses into GMO risk assessment in Europe: a case study from soybean field trials

Benevenuto, Rafael Fonseca; Zanatta, Caroline Bedin; Waßmann, Friedrich; Eckerstorfer, Michael F.; Agapito-Tenfen, Sarah Zanon

doi:10.1186/s12302-023-00715-6

Environmental Sciences Europe

Table 4 List of differentially expressed proteins with allergenic potential in the GMO variety

From: Integration of omics analyses into GMO risk assessment in Europe: a case study from soybean field trials

Protein ID	Allergen group ID	Allergen name	E-value	% id	% sim	Alignment length
I1MJU7	gid\|2708	Heat shock cognate 70 [Aedes aegypti]	1.90E−96	0.505	0.778	626
A0A368UIA9	gid\|466	Pre-pro-cucumisin [Cucumis melo]	2.40E−75	0.519	0.740	655
A0A0R0GB30	gid\|18	Actinidain [Actinidia deliciosa]	1.20E−50	0.516	0.779	217
I1JN31	gid\|775	Serine carboxypep [Triticum aestivum]	6.20E−43	0.401	0.661	454
H9TN50	gid\|80	Beta-expansin 1 [Zea mays]	2.80E−37	0.448	0.714	241
I1KJJ3	gid\|193	Patatin [Solanum tuberosum]	3.90E−35	0.386	0.675	378
C6TB56	gid\|2582	Alcohol dehydrogenase [Cochliobolus lunatus]	1.30E−33	0.292	0.625	360
I1KV03	gid\|585	ENSP-like protein [Hevea brasiliensis]	1.10E−27	0.318	0.592	368
A0A0R0H4Q8	gid\|466	Pre-pro-cucumisin [Cucumis melo]	4.70E−26	0.391	0.664	763
C6TMK2	gid\|2371	Seed maturation-like protein [Sesamum indicum]	1.60E−21	0.322	0.625	267
A0A0R0EBE6	gid\|775	Serine carboxypep [Triticum aestivum]	2.10E−20	0.321	0.596	240
E3W9C1	gid\|63	Protein disulfide-isomerase (PDI) [Triticum aestivum]	1.90E−11	0.333	0.612	183
I1MCW6	gid\|773	Putative leucine-rich repeat protein [Triticum aestivum]	1.40E−07	0.299	0.584	137
A0A0R0HG00	gid\|773	Putative leucine-rich repeat pro [Triticum aestivum]	5.00E−06	0.388	0.675	80
K7MP06	\|gid\|1067	Conglutin beta [Lupinus angustifolius]	5.10E−06	0.231	0.592	277
I1JNS6	gid\|1747	Pollen allergen CPA63 [Cryptomeria japonica]	2.00E−05	0.225	0.527	395
K7N4K5	gid\|1248	Eukaryotic translation initiation factor [Forcipomyia taiwana]	8.60E−05	0.199	0.497	306
I1KNN1	gid\|626	Putative allergen [Lepidoglyphus destructor]	2.00E−02	0.284	0.556	81
I1JBW8	gid\|151	Gliadin [Triticum aestivum]	2.00E−02	0.354	0.523	65
K7N502	\|gid\|359	Chain A, Nmr Solution Structure [Blomia tropicalis]	1.10E−01	0.313	0.582	67
I1M5W5	gid\|150	Omega-gliadin [Triticum aestivum]	1.40E−01	0.254	0.465	256
I1JBW7	gid\|1338	Ragweed homologue of Art v 1 precursor [Ambrosia artemisiifolia]	1.80E−01	0.263	0.545	99
C6TJD3	gid\|1248	Eukaryotic translation initiation factor [Forcipomyia taiwana]	1.90E−01	0.216	0.538	320
I1KQH7	gid\|90	Tropomyosin [Allergen Ani s 3]	2.20E−01	0.234	0.558	154
A0A0R0EKI3	gid\|1067	Conglutin beta [Lupinus angustifolius]	2.40E−01	0.273	0.557	88
C6TCJ7	gid\|2215	Glutathione S-tran [Ascaris suum]	3.20E−01	0.692	0.846	13
I1MWX3	gid\|1542	Cys peroxiredox [Triticum aestivum]	3.30E−01	0.270	0.549	122
I1KUN7	gid\|1044	Tropomyosin [Balanus rostratus]	3.40E−01	0.311	0.581	74
K7LKW9	gid\|1743	Troponin C [Crangon crangon]	3.80E−01	0.327	0.714	49
I1L1U5	gid\|471	Cyn d 1 [Cynodon dactylon]	5.70E−01	0.235	0.513	115
I1L171	gid\|1910	Non-specific lip [Lycium barbarum]	7.00E−01	0.387	0.645	31
K7KLL1	gid\|1191	Lit v 1 tropomyosin [Litopenaeus vannamei]	7.50E−01	0.232	0.568	241
A0A0R0JFR0	gid\|74	Pollen allergen Amb t 5 precursor [Ambrosia trifida]	8.10E−01	0.474	0.737	19
I1JE93	gid\|1560	Salivary antigen 5 precursor [Glossina morsitans morsitans]	8.70E−01	0.213	0.521	169
I1LQ02	gid\|594	Latex allergen [Hevea brasiliensis]	1.20E+01	0.256	0.556	117
I1K5D3	gid\|1828	Tropomyosin [Onchocerca volvulus]	1.50E+01	0.238	0.531	277
I1JPL2	gid\|1338	Ragweed homologue of Art v 1 precursor [Ambrosia artemisiifolia]	1.60E+01	0.521	0.563	48
I1NAV4	gid\|150	Omega-5 gliadin [Triticum aestivum]	2.10E+01	0.253	0.578	83
I1LTG9	gid\|1338	Ragweed homologue of Art v 1 precursor [Ambrosia artemisiifolia]	2.70E+01	0.432	0.514	37
I1N806	gid\|2725	Putative galactose oxidase [Artemisia argyi]	4.50E+01	0.265	0.554	83
C6T8R3	gid\|2371	Seed maturation-like protein precursor [Sesamum indicum]	4.90E+01	0.248	0.524	145
C6TFY0	gid\|150	Omega-gliadin, partial [Triticum aestivum]	6.90E+01	0.284	0.612	67
Q84ZV1	gid\|698	Calcium-binding protein [Olea europaea]	9.10E+01	0.484	0.766	64

The table shows differential protein UniProt ID; allergen GenBank ID and name; E-value statistical score; percent identity of the overlapping alignment; percent similarity; and amino acids alignment length in query protein to the aligned allergen

Back to article page