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Table 7 Comparison of log2 FC-values of two single genes (AC204711.3_FG003, GRMZM2G127948) obtained by DGE (DESeq2, EdgeR) and single gene (RT-qPCR) analysis

From: Analysis of transcriptomic differences between NK603 maize and near-isogenic varieties using RNA sequencing and RT-qPCR

AC204711.3_FG003 Senescence-associated protein DIN1

 DGE analysis

AG8025

AG9045

 Deseq2

 + 2.20

 + 1.34

 EdgeR

 + 2.92

 + 2.20

 RT-qPCR analysis

 + 5.08

 + 2.32

GRMZM2G127948 Caffeoyl-CoA O-methyltransferase1

 DGE analysis

AG8025

AG9045

 Deseq2

−1.81

−1.29

 EdgeR

−1.97

−1.45

 RT-qPCR analysis

−1.21

−0.82