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Table 7 Comparison of log2 FC-values of two single genes (AC204711.3_FG003, GRMZM2G127948) obtained by DGE (DESeq2, EdgeR) and single gene (RT-qPCR) analysis

From: Analysis of transcriptomic differences between NK603 maize and near-isogenic varieties using RNA sequencing and RT-qPCR

AC204711.3_FG003 Senescence-associated protein DIN1
 DGE analysis AG8025 AG9045
 Deseq2  + 2.20  + 1.34
 EdgeR  + 2.92  + 2.20
 RT-qPCR analysis  + 5.08  + 2.32
GRMZM2G127948 Caffeoyl-CoA O-methyltransferase1
 DGE analysis AG8025 AG9045
 Deseq2 −1.81 −1.29
 EdgeR −1.97 −1.45
 RT-qPCR analysis −1.21 −0.82