TY - JOUR AU - Bi, S. AU - Sourjik, V. PY - 2018 DA - 2018// TI - Stimulus sensing and signal processing in bacterial chemotaxis JO - Curr Opin Microbiol VL - 45 UR - https://doi.org/10.1016/j.mib.2018.02.002 DO - 10.1016/j.mib.2018.02.002 ID - Bi2018 ER - TY - JOUR AU - Xin, X. AU - Othmer, H. G. PY - 2012 DA - 2012// TI - A “trimer of dimers”-based model for the chemotactic signal transduction network in bacterial chemotaxis JO - Bull Math Biol VL - 74 UR - https://doi.org/10.1007/s11538-012-9756-7 DO - 10.1007/s11538-012-9756-7 ID - Xin2012 ER - TY - JOUR AU - Xue, C. AU - Othmer, H. G. PY - 2009 DA - 2009// TI - Multiscale models of taxis-driven patterning in bacterial populations JO - SIAM J Appl Math VL - 70 UR - https://doi.org/10.1137/070711505 DO - 10.1137/070711505 ID - Xue2009 ER - TY - JOUR AU - Blumer, M. AU - Blumer, W. AU - Reich, T. PY - 1977 DA - 1977// TI - Polycyclic aromatic hydrocarbons in soils of a mountain valley: correlation with highway traffic and cancer incidence JO - Environ Sci Technol VL - 11 UR - https://doi.org/10.1021/es60135a002 DO - 10.1021/es60135a002 ID - Blumer1977 ER - TY - JOUR AU - Nguyen, T. C. AU - Loganathan, P. AU - Nguyen, T. V. AU - Vigneswaran, S. AU - Kandasamy, J. AU - Slee, D. AU - Stevenson, G. AU - Naidu, R. PY - 2014 DA - 2014// TI - Polycyclic aromatic hydrocarbons in road-deposited sediments, water sediments, and soils in Sydney, Australia: comparisons of concentration distribution, sources and potential toxicity JO - Ecotoxicol Environ Saf VL - 104 UR - https://doi.org/10.1016/j.ecoenv.2014.03.010 DO - 10.1016/j.ecoenv.2014.03.010 ID - Nguyen2014 ER - TY - JOUR AU - Li, P. AU - Wang, Y. AU - Li, Y. AU - Wai, K. AU - Li, H. AU - Tong, L. PY - 2016 DA - 2016// TI - Gas-particle partitioning and precipitation scavenging of polycyclic aromatic hydrocarbons (PAHs) in the free troposphere in southern China JO - Atmos Environ VL - 128 UR - https://doi.org/10.1016/j.atmosenv.2015.12.030 DO - 10.1016/j.atmosenv.2015.12.030 ID - Li2016 ER - TY - JOUR AU - Cerniglia, C. E. PY - 1992 DA - 1992// TI - Biodegradation of polycyclic aromatic hydrocarbons JO - Biodegradation VL - 3 UR - https://doi.org/10.1007/BF00129093 DO - 10.1007/BF00129093 ID - Cerniglia1992 ER - TY - JOUR AU - Haritash, A. K. AU - Kaushik, C. P. PY - 2009 DA - 2009// TI - Biodegradation aspects of polycyclic aromatic hydrocarbons (PAHs): a review JO - J Hazard Mater VL - 169 UR - https://doi.org/10.1016/j.jhazmat.2009.03.137 DO - 10.1016/j.jhazmat.2009.03.137 ID - Haritash2009 ER - TY - JOUR PY - 1999 DA - 1999// TI - Directive 1999/31/EC of the European Parliament and of the Council of 27 September 2001 of 26 April 1999 on the landfill of waste JO - Off J Eur Commun VL - 182 ID - ref9 ER - TY - JOUR AU - Ghosal, D. AU - Ghosh, S. AU - Dutta, T. K. AU - Ahn, Y. PY - 2016 DA - 2016// TI - Current state of knowledge in microbial degradation of polycyclic aromatic hydrocarbons (PAHs): a review JO - Front Microbiol UR - https://doi.org/10.3389/fmicb.2016.01369 DO - 10.3389/fmicb.2016.01369 ID - Ghosal2016 ER - TY - JOUR AU - Fuchs, G. AU - Boll, M. AU - Heider, J. PY - 2011 DA - 2011// TI - Microbial degradation of aromatic compounds—from one strategy to four JO - Nat Rev Microbiol VL - 9 UR - https://doi.org/10.1038/nrmicro2652 DO - 10.1038/nrmicro2652 ID - Fuchs2011 ER - TY - JOUR AU - Ghosh, S. AU - Chisti, Y. AU - Banerjee, U. C. PY - 2012 DA - 2012// TI - Production of shikimic acid JO - Biotechnol Adv VL - 30 UR - https://doi.org/10.1016/j.biotechadv.2012.03.001 DO - 10.1016/j.biotechadv.2012.03.001 ID - Ghosh2012 ER - TY - STD TI - Zhan J (2009) Biosynthesis of Bacterial Aromatic Polyketides. http://www.ingentaconnect.com/content/ben/ctmc/2009/00000009/00000017/art00002. Accessed 6 Nov 2018 UR - http://www.ingentaconnect.com/content/ben/ctmc/2009/00000009/00000017/art00002 ID - ref13 ER - TY - JOUR AU - Zhu, D. AU - Zhang, P. AU - Xie, C. AU - Zhang, W. AU - Sun, J. AU - Qian, W. -. J. AU - Yang, B. PY - 2017 DA - 2017// TI - Biodegradation of alkaline lignin by Bacillus ligniniphilus L1 JO - Biotechnol Biofuels VL - 10 UR - https://doi.org/10.1186/s13068-017-0735-y DO - 10.1186/s13068-017-0735-y ID - Zhu2017 ER - TY - JOUR AU - Bhushan, B. AU - Halasz, A. AU - Thiboutot, S. AU - Ampleman, G. AU - Hawari, J. PY - 2004 DA - 2004// TI - Chemotaxis-mediated biodegradation of cyclic nitramine explosives RDX, HMX, and CL-20 by Clostridium sp. EDB2 JO - Biochem Biophys Res Commun VL - 316 UR - https://doi.org/10.1016/j.bbrc.2004.02.120 DO - 10.1016/j.bbrc.2004.02.120 ID - Bhushan2004 ER - TY - JOUR AU - Marx, R. B. AU - Aitken, M. D. PY - 2000 DA - 2000// TI - Bacterial chemotaxis enhances naphthalene degradation in a heterogeneous aqueous system JO - Environ Sci Technol VL - 34 UR - https://doi.org/10.1021/es000904k DO - 10.1021/es000904k ID - Marx2000 ER - TY - JOUR AU - Abdel-Shafy, H. I. AU - Mansour, M. S. M. PY - 2016 DA - 2016// TI - A review on polycyclic aromatic hydrocarbons: source, environmental impact, effect on human health and remediation JO - Egypt J Pet VL - 25 UR - https://doi.org/10.1016/j.ejpe.2015.03.011 DO - 10.1016/j.ejpe.2015.03.011 ID - Abdel-Shafy2016 ER - TY - JOUR AU - Johnsen, A. R. AU - Wick, L. Y. AU - Harms, H. PY - 2005 DA - 2005// TI - Principles of microbial PAH-degradation in soil JO - Environ Pollut VL - 133 UR - https://doi.org/10.1016/j.envpol.2004.04.015 DO - 10.1016/j.envpol.2004.04.015 ID - Johnsen2005 ER - TY - JOUR AU - Estrellan, C. R. AU - Iino, F. PY - 2010 DA - 2010// TI - Toxic emissions from open burning JO - Chemosphere VL - 80 UR - https://doi.org/10.1016/j.chemosphere.2010.03.057 DO - 10.1016/j.chemosphere.2010.03.057 ID - Estrellan2010 ER - TY - JOUR AU - Lima, A. L. C. AU - Farrington, J. W. AU - Reddy, C. M. PY - 2005 DA - 2005// TI - Combustion-derived polycyclic aromatic hydrocarbons in the environment—a review JO - Environ Forensics VL - 6 UR - https://doi.org/10.1080/15275920590952739 DO - 10.1080/15275920590952739 ID - Lima2005 ER - TY - JOUR AU - Grimmer, G. AU - Hildebrandt, A. PY - 1965 DA - 1965// TI - Kohlenwasserstoffe in der Umgebung des Menschen JO - Z Krebs-forsch VL - 67 UR - https://doi.org/10.1007/BF00524860 DO - 10.1007/BF00524860 ID - Grimmer1965 ER - TY - JOUR AU - Zhang, J. AU - Yang, J. AU - Wang, R. AU - Hou, H. AU - Du, X. AU - Fan, S. AU - Liu, J. AU - Dai, J. PY - 2013 DA - 2013// TI - Effects of pollution sources and soil properties on distribution of polycyclic aromatic hydrocarbons and risk assessment JO - Sci Total Environ VL - 463–464 UR - https://doi.org/10.1016/j.scitotenv.2013.05.066 DO - 10.1016/j.scitotenv.2013.05.066 ID - Zhang2013 ER - TY - JOUR AU - Bourotte, C. AU - Forti, M. C. AU - Lucas, Y. AU - Melfi, A. J. PY - 2009 DA - 2009// TI - Comparison of Polycyclic Aromatic Hydrocarbon (PAHs) concentrations in urban and natural forest soils in the Atlantic Forest (São Paulo State) JO - An Acad Bras Cienc VL - 81 UR - https://doi.org/10.1590/S0001-37652009000100013 DO - 10.1590/S0001-37652009000100013 ID - Bourotte2009 ER - TY - JOUR AU - Pokhrel, B. AU - Gong, P. AU - Wang, X. AU - Wang, C. AU - Gao, S. PY - 2018 DA - 2018// TI - Polycyclic aromatic hydrocarbons in the urban atmosphere of Nepal: distribution, sources, seasonal trends, and cancer risk JO - Sci Total Environ VL - 618 UR - https://doi.org/10.1016/j.scitotenv.2017.09.329 DO - 10.1016/j.scitotenv.2017.09.329 ID - Pokhrel2018 ER - TY - JOUR AU - Mishra, N. AU - Ayoko, G. A. AU - Morawska, L. PY - 2016 DA - 2016// TI - Atmospheric polycyclic aromatic hydrocarbons in the urban environment: occurrence, toxicity and source apportionment JO - Environ Pollut VL - 208 UR - https://doi.org/10.1016/j.envpol.2015.08.015 DO - 10.1016/j.envpol.2015.08.015 ID - Mishra2016 ER - TY - JOUR AU - Wang, C. AU - Zhou, S. AU - Song, J. AU - Wu, S. PY - 2018 DA - 2018// TI - Human health risks of polycyclic aromatic hydrocarbons in the urban soils of Nanjing, China JO - Sci Total Environ VL - 612 UR - https://doi.org/10.1016/j.scitotenv.2017.08.269 DO - 10.1016/j.scitotenv.2017.08.269 ID - Wang2018 ER - TY - JOUR AU - Wu, M. -. T. AU - Lin, P. -. C. AU - Pan, C. -. H. AU - Peng, C. -. Y. PY - 2019 DA - 2019// TI - Risk assessment of personal exposure to polycyclic aromatic hydrocarbons and aldehydes in three commercial cooking workplaces JO - Sci Rep VL - 9 UR - https://doi.org/10.1038/s41598-018-38082-5 DO - 10.1038/s41598-018-38082-5 ID - Wu2019 ER - TY - JOUR AU - Leigh, M. B. AU - Prouzová, P. AU - Macková, M. AU - Macek, T. AU - Nagle, D. P. AU - Fletcher, J. S. PY - 2006 DA - 2006// TI - Polychlorinated biphenyl (PCB)-degrading bacteria associated with trees in a PCB-contaminated site JO - Appl Environ Microbiol VL - 72 UR - https://doi.org/10.1128/AEM.72.4.2331-2342.2006 DO - 10.1128/AEM.72.4.2331-2342.2006 ID - Leigh2006 ER - TY - JOUR AU - Mangwani, N. AU - Kumari, S. AU - Das, S. PY - 2017 DA - 2017// TI - Marine bacterial biofilms in bioremediation of polycyclic aromatic hydrocarbons (PAHs) under terrestrial condition in a soil microcosm JO - Pedosphere VL - 27 UR - https://doi.org/10.1016/S1002-0160(17)60350-3 DO - 10.1016/S1002-0160(17)60350-3 ID - Mangwani2017 ER - TY - JOUR AU - Turnbull, G. A. AU - Morgan, J. A. W. AU - Whipps, J. M. AU - Saunders, J. R. PY - 2001 DA - 2001// TI - The role of motility in the in vitro attachment of Pseudomonas putida PaW8 to wheat roots JO - FEMS Microbiol Ecol VL - 35 UR - https://doi.org/10.1016/S0168-6496(00)00111-2 DO - 10.1016/S0168-6496(00)00111-2 ID - Turnbull2001 ER - TY - JOUR AU - Samanta, S. K. AU - Bhushan, B. AU - Chauhan, A. AU - Jain, R. K. PY - 2000 DA - 2000// TI - Chemotaxis of a Ralstonia sp. SJ98 toward different nitroaromatic compounds and their degradation JO - Biochem Biophys Res Commun VL - 269 UR - https://doi.org/10.1006/bbrc.2000.2204 DO - 10.1006/bbrc.2000.2204 ID - Samanta2000 ER - TY - CHAP AU - Simon, M. I. ED - Joint, I. PY - 1995 DA - 1995// TI - Signal Transduction in Microorganisms BT - Molecular ecology of aquatic microbes PB - Springer CY - Berlin Heidelberg UR - https://doi.org/10.1007/978-3-642-79923-5_12 DO - 10.1007/978-3-642-79923-5_12 ID - Simon1995 ER - TY - JOUR AU - Ramos, J. L. AU - Duque, E. AU - Gallegos, M. -. T. AU - Godoy, P. AU - Ramos-González, M. I. AU - Rojas, A. AU - Terán, W. AU - Segura, A. PY - 2002 DA - 2002// TI - Mechanisms of solvent tolerance in gram-negative bacteria JO - Annu Rev Microbiol VL - 56 UR - https://doi.org/10.1146/annurev.micro.56.012302.161038 DO - 10.1146/annurev.micro.56.012302.161038 ID - Ramos2002 ER - TY - BOOK AU - Parales, R. E. AU - Parales, J. V. AU - Pelletier, D. A. AU - Ditty, J. L. PY - 2008 DA - 2008// TI - Chapter 1 diversity of microbial toluene degradation pathways. Advances in applied microbiology PB - Academic Press CY - New York ID - Parales2008 ER - TY - JOUR AU - Wuichet, K. AU - Zhulin, I. B. PY - 2010 DA - 2010// TI - Origins and diversification of a complex signal transduction system in prokaryotes JO - Sci Signal VL - 3 UR - https://doi.org/10.1126/scisignal.2000724 DO - 10.1126/scisignal.2000724 ID - Wuichet2010 ER - TY - JOUR AU - Lacal, J. AU - Reyes-Darias, J. A. AU - García-Fontana, C. AU - Ramos, J. -. L. AU - Krell, T. PY - 2013 DA - 2013// TI - Tactic responses to pollutants and their potential to increase biodegradation efficiency JO - J Appl Microbiol VL - 114 UR - https://doi.org/10.1111/jam.12076 DO - 10.1111/jam.12076 ID - Lacal2013 ER - TY - JOUR AU - Ulrich, L. E. AU - Koonin, E. V. AU - Zhulin, I. B. PY - 2005 DA - 2005// TI - One-component systems dominate signal transduction in prokaryotes JO - Trends Microbiol VL - 13 UR - https://doi.org/10.1016/j.tim.2004.12.006 DO - 10.1016/j.tim.2004.12.006 ID - Ulrich2005 ER - TY - JOUR AU - Alekshun, M. N. AU - Levy, S. B. AU - Mealy, T. R. AU - Seaton, B. A. AU - Head, J. F. PY - 2001 DA - 2001// TI - The crystal structure of MarR, a regulator of multiple antibiotic resistance, at 2.3 A resolution JO - Nat Struct Biol VL - 8 UR - https://doi.org/10.1038/90429 DO - 10.1038/90429 ID - Alekshun2001 ER - TY - JOUR AU - Tuckerman, J. R. AU - Gonzalez, G. AU - Sousa, E. H. S. AU - Wan, X. AU - Saito, J. A. AU - Alam, M. AU - Gilles-Gonzalez, M. -. A. PY - 2009 DA - 2009// TI - An oxygen-sensing diguanylate cyclase and phosphodiesterase couple for c-di-GMP control JO - Biochemistry VL - 48 UR - https://doi.org/10.1021/bi901409g DO - 10.1021/bi901409g ID - Tuckerman2009 ER - TY - BOOK AU - Krell, T. PY - 2016 DA - 2016// TI - Two-component systems that control the expression of aromatic hydrocarbon degradation pathways PB - Wiley CY - New York ID - Krell2016 ER - TY - JOUR AU - Nixon, B. T. AU - Ronson, C. W. AU - Ausubel, F. M. PY - 1986 DA - 1986// TI - Two-component regulatory systems responsive to environmental stimuli share strongly conserved domains with the nitrogen assimilation regulatory genes ntrB and ntrC JO - PNAS VL - 83 UR - https://doi.org/10.1073/pnas.83.20.7850 DO - 10.1073/pnas.83.20.7850 ID - Nixon1986 ER - TY - JOUR AU - Galperin, M. Y. PY - 2010 DA - 2010// TI - Diversity of structure and function of response regulator output domains JO - Curr Opin Microbiol VL - 13 UR - https://doi.org/10.1016/j.mib.2010.01.005 DO - 10.1016/j.mib.2010.01.005 ID - Galperin2010 ER - TY - JOUR AU - Stock, A. M. AU - Robinson, V. L. AU - Goudreau, P. N. PY - 2000 DA - 2000// TI - Two-component signal transduction JO - Annu Rev Biochem VL - 69 UR - https://doi.org/10.1146/annurev.biochem.69.1.183 DO - 10.1146/annurev.biochem.69.1.183 ID - Stock2000 ER - TY - JOUR AU - Capra, E. J. AU - Laub, M. T. PY - 2012 DA - 2012// TI - Evolution of two-component signal transduction systems JO - Annu Rev Microbiol VL - 66 UR - https://doi.org/10.1146/annurev-micro-092611-150039 DO - 10.1146/annurev-micro-092611-150039 ID - Capra2012 ER - TY - JOUR AU - Zschiedrich, C. P. AU - Keidel, V. AU - Szurmant, H. PY - 2016 DA - 2016// TI - Molecular mechanisms of two-component signal transduction JO - J Mol Biol VL - 428 UR - https://doi.org/10.1016/j.jmb.2016.08.003 DO - 10.1016/j.jmb.2016.08.003 ID - Zschiedrich2016 ER - TY - JOUR AU - Lacal, J. AU - Alfonso, C. AU - Liu, X. AU - Parales, R. E. AU - Morel, B. AU - Conejero-Lara, F. AU - Rivas, G. AU - Duque, E. AU - Ramos, J. L. AU - Krell, T. PY - 2010 DA - 2010// TI - Identification of a chemoreceptor for tricarboxylic acid cycle intermediates differential chemotactic response towards receptor ligands JO - J Biol Chem VL - 285 UR - https://doi.org/10.1074/jbc.M110.110403 DO - 10.1074/jbc.M110.110403 ID - Lacal2010 ER - TY - JOUR AU - Österberg, S. AU - Skärfstad, E. AU - Shingler, V. PY - 2010 DA - 2010// TI - The σ-factor FliA, ppGpp and DksA coordinate transcriptional control of the aer2 gene of Pseudomonas putida JO - Environ Microbiol VL - 12 UR - https://doi.org/10.1111/j.1462-2920.2009.02139.x DO - 10.1111/j.1462-2920.2009.02139.x ID - Österberg2010 ER - TY - JOUR AU - Partridge, J. D. AU - Nhu, N. T. Q. AU - Dufour, Y. S. AU - Harshey, R. M. PY - 2019 DA - 2019// TI - Escherichia coli remodels the chemotaxis pathway for swarming JO - mBio VL - 10 UR - https://doi.org/10.1128/mBio.00316-19 DO - 10.1128/mBio.00316-19 ID - Partridge2019 ER - TY - JOUR AU - Hansen, C. H. AU - Endres, R. G. AU - Wingreen, N. S. PY - 2008 DA - 2008// TI - Chemotaxis in Escherichia coli: a molecular model for robust precise adaptation JO - PLoS Comput Biol VL - 4 UR - https://doi.org/10.1371/journal.pcbi.0040001 DO - 10.1371/journal.pcbi.0040001 ID - Hansen2008 ER - TY - JOUR AU - Parkinson, J. S. AU - Hazelbauer, G. L. AU - Falke, J. J. PY - 2015 DA - 2015// TI - Signaling and sensory adaptation in Escherichia coli chemoreceptors: 2015 update JO - Trends Microbiol VL - 23 UR - https://doi.org/10.1016/j.tim.2015.03.003 DO - 10.1016/j.tim.2015.03.003 ID - Parkinson2015 ER - TY - JOUR AU - Lacal, J. AU - García-Fontana, C. AU - Muñoz-Martínez, F. AU - Ramos, J. -. L. AU - Krell, T. PY - 2010 DA - 2010// TI - Sensing of environmental signals: classification of chemoreceptors according to the size of their ligand binding regions JO - Environ Microbiol VL - 12 UR - https://doi.org/10.1111/j.1462-2920.2010.02325.x DO - 10.1111/j.1462-2920.2010.02325.x ID - Lacal2010 ER - TY - JOUR AU - Matsunaga, T. AU - Okamura, Y. AU - Fukuda, Y. AU - Wahyudi, A. T. AU - Murase, Y. AU - Takeyama, H. PY - 2005 DA - 2005// TI - Complete genome sequence of the facultative anaerobic magnetotactic bacterium Magnetospirillum sp. strain AMB-1 JO - DNA Res VL - 12 UR - https://doi.org/10.1093/dnares/dsi002 DO - 10.1093/dnares/dsi002 ID - Matsunaga2005 ER - TY - JOUR AU - Ortega, Á. AU - Zhulin, I. B. AU - Krell, T. PY - 2017 DA - 2017// TI - Sensory repertoire of bacterial chemoreceptors JO - Microbiol Mol Biol Rev VL - 81 UR - https://doi.org/10.1128/MMBR.00033-17 DO - 10.1128/MMBR.00033-17 ID - Ortega2017 ER - TY - JOUR AU - Hazelbauer, G. L. AU - Lai, W. -. C. PY - 2010 DA - 2010// TI - Bacterial chemoreceptors: providing enhanced features to two-component signaling JO - Curr Opin Microbiol VL - 13 UR - https://doi.org/10.1016/j.mib.2009.12.014 DO - 10.1016/j.mib.2009.12.014 ID - Hazelbauer2010 ER - TY - JOUR AU - Hazelbauer, G. L. AU - Falke, J. J. AU - Parkinson, J. S. PY - 2008 DA - 2008// TI - Bacterial chemoreceptors: high-performance signaling in networked arrays JO - Trends Biochem Sci VL - 33 UR - https://doi.org/10.1016/j.tibs.2007.09.014 DO - 10.1016/j.tibs.2007.09.014 ID - Hazelbauer2008 ER - TY - JOUR AU - Wadhams, G. H. AU - Armitage, J. P. PY - 2004 DA - 2004// TI - Making sense of it all: bacterial chemotaxis JO - Nat Rev Mol Cell Biol VL - 5 UR - https://doi.org/10.1038/nrm1524 DO - 10.1038/nrm1524 ID - Wadhams2004 ER - TY - JOUR AU - Berg, H. C. AU - Purcell, E. M. PY - 1977 DA - 1977// TI - Physics of chemoreception JO - Biophys J VL - 20 UR - https://doi.org/10.1016/S0006-3495(77)85544-6 DO - 10.1016/S0006-3495(77)85544-6 ID - Berg1977 ER - TY - JOUR AU - Tena-Garitaonaindia, M. AU - Llamas, I. AU - Toral, L. AU - Sampedro, I. PY - 2019 DA - 2019// TI - Chemotaxis of halophilic bacterium Halomonas anticariensis FP35 towards the environmental pollutants phenol and naphthalene JO - Sci Total Environ VL - 669 UR - https://doi.org/10.1016/j.scitotenv.2019.02.444 DO - 10.1016/j.scitotenv.2019.02.444 ID - Tena-Garitaonaindia2019 ER - TY - JOUR AU - Sourjik, V. AU - Wingreen, N. S. PY - 2012 DA - 2012// TI - Responding to chemical gradients: bacterial chemotaxis JO - Curr Opin Cell Biol VL - 24 UR - https://doi.org/10.1016/j.ceb.2011.11.008 DO - 10.1016/j.ceb.2011.11.008 ID - Sourjik2012 ER - TY - JOUR AU - Yonekawa, H. AU - Hayashi, H. AU - Parkinson, J. S. PY - 1983 DA - 1983// TI - Requirement of the cheB function for sensory adaptation in Escherichia coli JO - J Bacteriol VL - 156 UR - https://doi.org/10.1128/JB.156.3.1228-1235.1983 DO - 10.1128/JB.156.3.1228-1235.1983 ID - Yonekawa1983 ER - TY - JOUR AU - Wuichet, K. AU - Alexander, R. P. AU - Zhulin, I. B. PY - 2007 DA - 2007// TI - Comparative genomic and protein sequence analyses of a complex system controlling bacterial chemotaxis JO - Meth Enzymol VL - 422 UR - https://doi.org/10.1016/S0076-6879(06)22001-9 DO - 10.1016/S0076-6879(06)22001-9 ID - Wuichet2007 ER - TY - JOUR AU - Alexander, R. P. AU - Zhulin, I. B. PY - 2007 DA - 2007// TI - Evolutionary genomics reveals conserved structural determinants of signaling and adaptation in microbial chemoreceptors JO - Proc Natl Acad Sci VL - 104 UR - https://doi.org/10.1073/pnas.0609359104 DO - 10.1073/pnas.0609359104 ID - Alexander2007 ER - TY - JOUR AU - Ferris, H. U. AU - Dunin-Horkawicz, S. AU - Hornig, N. AU - Hulko, M. AU - Martin, J. AU - Schultz, J. E. AU - Zeth, K. AU - Lupas, A. N. AU - Coles, M. PY - 2012 DA - 2012// TI - Mechanism of regulation of receptor histidine kinases JO - Structure VL - 20 UR - https://doi.org/10.1016/j.str.2011.11.014 DO - 10.1016/j.str.2011.11.014 ID - Ferris2012 ER - TY - CHAP AU - Wuichet, K. AU - Alexander, R. P. AU - Zhulin, I. B. ED - Simon, M. I. ED - Crane, B. R. ED - Crane, A. PY - 2007 DA - 2007// TI - Comparative genomic and protein sequence analyses of a complex system controlling bacterial chemotaxis BT - Methods in enzymology PB - Academic Press CY - New York ID - Wuichet2007 ER - TY - JOUR AU - Ulrich, L. E. AU - Zhulin, I. B. PY - 2010 DA - 2010// TI - The MiST2 database: a comprehensive genomics resource on microbial signal transduction JO - Nucleic Acids Res VL - 38 UR - https://doi.org/10.1093/nar/gkp940 DO - 10.1093/nar/gkp940 ID - Ulrich2010 ER - TY - BOOK AU - Rao, C. V. AU - Ordal, G. W. PY - 2009 DA - 2009// TI - The molecular basis of excitation and adaptation during chemotactic sensory transduction in bacteria. Contributions to microbiology PB - Karger Publishers CY - Basel ID - Rao2009 ER - TY - BOOK AU - Stock, J. B. AU - Clarke, S. AU - Koshland, D. E. PY - 1984 DA - 1984// TI - The protein carboxylmethyltransferase involved in Escherichia coli and Salmonella typhimurium chemotaxis. Methods in Enzymology PB - Academic Press CY - New York ID - Stock1984 ER - TY - JOUR AU - Lupas, A. AU - Stock, J. PY - 1989 DA - 1989// TI - Phosphorylation of an N-terminal regulatory domain activates the CheB methylesterase in bacterial chemotaxis JO - J Biol Chem VL - 264 ID - Lupas1989 ER - TY - JOUR AU - Szurmant, H. AU - Ordal, G. W. PY - 2004 DA - 2004// TI - Diversity in chemotaxis mechanisms among the bacteria and archaea JO - Microbiol Mol Biol Rev VL - 68 UR - https://doi.org/10.1128/MMBR.68.2.301-319.2004 DO - 10.1128/MMBR.68.2.301-319.2004 ID - Szurmant2004 ER - TY - JOUR AU - Wang, Y. -. H. AU - Huang, Z. AU - Liu, S. -. J. PY - 2019 DA - 2019// TI - Chemotaxis towards aromatic compounds: insights from Comamonas testosteroni JO - Int J Mol Sci VL - 20 UR - https://doi.org/10.3390/ijms20112701 DO - 10.3390/ijms20112701 ID - Wang2019 ER - TY - JOUR AU - Harwood, C. S. AU - Rivelli, M. AU - Ornston, L. N. PY - 1984 DA - 1984// TI - Aromatic acids are chemoattractants for Pseudomonas putida JO - J Bacteriol VL - 160 UR - https://doi.org/10.1128/JB.160.2.622-628.1984 DO - 10.1128/JB.160.2.622-628.1984 ID - Harwood1984 ER - TY - JOUR AU - Parales, R. E. AU - Luu, R. A. AU - Hughes, J. G. AU - Ditty, J. L. PY - 2015 DA - 2015// TI - Bacterial chemotaxis to xenobiotic chemicals and naturally-occurring analogs JO - Curr Opin Biotechnol VL - 33 UR - https://doi.org/10.1016/j.copbio.2015.03.017 DO - 10.1016/j.copbio.2015.03.017 ID - Parales2015 ER - TY - JOUR AU - Sampedro, I. AU - Parales, R. E. AU - Krell, T. AU - Hill, J. E. PY - 2015 DA - 2015// TI - Pseudomonas chemotaxis JO - FEMS Microbiol Rev VL - 39 UR - https://doi.org/10.1111/1574-6976.12081 DO - 10.1111/1574-6976.12081 ID - Sampedro2015 ER - TY - JOUR AU - Harwood, C. S. AU - Parales, R. E. AU - Dispensa, M. PY - 1990 DA - 1990// TI - Chemotaxis of Pseudomonas putida toward chlorinated benzoates JO - Appl Environ Microbiol VL - 56 UR - https://doi.org/10.1128/AEM.56.5.1501-1503.1990 DO - 10.1128/AEM.56.5.1501-1503.1990 ID - Harwood1990 ER - TY - JOUR AU - Parales, R. E. AU - Ditty, J. L. AU - Harwood, C. S. PY - 2000 DA - 2000// TI - Toluene-degrading bacteria are chemotactic towards the environmental pollutants benzene, toluene, and trichloroethylene JO - Appl Environ Microbiol VL - 66 UR - https://doi.org/10.1128/AEM.66.9.4098-4104.2000 DO - 10.1128/AEM.66.9.4098-4104.2000 ID - Parales2000 ER - TY - JOUR AU - Huang, Z. AU - Ni, B. AU - Jiang, C. Y. AU - Wu, Y. F. AU - He, Y. Z. AU - Parales, R. E. AU - Liu, S. J. PY - 2016 DA - 2016// TI - Direct sensing and signal transduction during bacterial chemotaxis toward aromatic compounds in Comamonas testosteroni JO - Mol Microbiol VL - 101 UR - https://doi.org/10.1111/mmi.13385 DO - 10.1111/mmi.13385 ID - Huang2016 ER - TY - JOUR AU - Marín, M. AU - Pérez-Pantoja, D. AU - Donoso, R. AU - Wray, V. AU - González, B. AU - Pieper, D. H. PY - 2010 DA - 2010// TI - Modified 3-oxoadipate pathway for the biodegradation of methylaromatics in Pseudomonas reinekei MT1 JO - J Bacteriol VL - 192 UR - https://doi.org/10.1128/JB.01208-09 DO - 10.1128/JB.01208-09 ID - Marín2010 ER - TY - JOUR AU - Suvorova, I. A. AU - Gelfand, M. S. PY - 2019 DA - 2019// TI - Comparative genomic analysis of the regulation of aromatic metabolism in betaproteobacteria JO - Front Microbiol UR - https://doi.org/10.3389/fmicb.2019.00642 DO - 10.3389/fmicb.2019.00642 ID - Suvorova2019 ER - TY - JOUR AU - Spormann, A. M. AU - Widdel, F. PY - 2000 DA - 2000// TI - Metabolism of alkylbenzenes, alkanes, and other hydrocarbons in anaerobic bacteria JO - Biodegradation VL - 11 UR - https://doi.org/10.1023/A:1011122631799 DO - 10.1023/A:1011122631799 ID - Spormann2000 ER - TY - JOUR AU - Chakraborty, R. AU - Coates, J. D. PY - 2004 DA - 2004// TI - Anaerobic degradation of monoaromatic hydrocarbons JO - Appl Microbiol Biotechnol VL - 64 UR - https://doi.org/10.1007/s00253-003-1526-x DO - 10.1007/s00253-003-1526-x ID - Chakraborty2004 ER - TY - JOUR AU - Foght, J. PY - 2008 DA - 2008// TI - Anaerobic biodegradation of aromatic hydrocarbons: pathways and prospects JO - MMB VL - 15 UR - https://doi.org/10.1159/000121324 DO - 10.1159/000121324 ID - Foght2008 ER - TY - JOUR AU - Weelink, S. A. B. AU - Eekert, M. H. A. AU - Stams, A. J. M. PY - 2010 DA - 2010// TI - Degradation of BTEX by anaerobic bacteria: physiology and application JO - Rev Environ Sci Biotechnol VL - 9 UR - https://doi.org/10.1007/s11157-010-9219-2 DO - 10.1007/s11157-010-9219-2 ID - Weelink2010 ER - TY - BOOK AU - Vandecasteele, J. -. P. AU - Jones, T. PY - 2008 DA - 2008// TI - Biodegradation of monoaromatic and chloroaromatic hydrocarbons. Petroleum microbiology PB - IFP Publications CY - France ID - Vandecasteele2008 ER - TY - JOUR AU - Santos, P. M. AU - Benndorf, D. AU - Sá-Correia, I. PY - 2004 DA - 2004// TI - Insights into Pseudomonas putida KT2440 response to phenol-induced stress by quantitative proteomics JO - Proteomics VL - 4 UR - https://doi.org/10.1002/pmic.200300793 DO - 10.1002/pmic.200300793 ID - Santos2004 ER - TY - CHAP AU - Nogales, J. AU - García, J. L. AU - Díaz, E. ED - Rojo, F. PY - 2017 DA - 2017// TI - Degradation of aromatic compounds in Pseudomonas: a systems biology view BT - Aerobic utilization of hydrocarbons, oils and lipids PB - Springer CY - Cham ID - Nogales2017 ER - TY - JOUR AU - Molina, L. AU - Duque, E. AU - Gómez, M. J. AU - Krell, T. AU - Lacal, J. AU - García-Puente, A. AU - García, V. AU - Matilla, M. A. AU - Ramos, J. -. L. AU - Segura, A. PY - 2011 DA - 2011// TI - The pGRT1 plasmid of Pseudomonas putida DOT-T1E encodes functions relevant for survival under harsh conditions in the environment JO - Environ Microbiol VL - 13 UR - https://doi.org/10.1111/j.1462-2920.2011.02492.x DO - 10.1111/j.1462-2920.2011.02492.x ID - Molina2011 ER - TY - JOUR AU - Luu, R. A. AU - Kootstra, J. D. AU - Nesteryuk, V. AU - Brunton, C. N. AU - Parales, J. V. AU - Ditty, J. L. AU - Parales, R. E. PY - 2015 DA - 2015// TI - Integration of chemotaxis, transport and catabolism in Pseudomonas putida and identification of the aromatic acid chemoreceptor PcaY: chemotaxis to aromatic acids in Pseudomonas putida JO - Mol Microbiol VL - 96 UR - https://doi.org/10.1111/mmi.12929 DO - 10.1111/mmi.12929 ID - Luu2015 ER - TY - JOUR AU - Zhang, J. AU - Xin, Y. AU - Liu, H. AU - Wang, S. AU - Zhou, N. PY - 2008 DA - 2008// TI - Metabolism-independent chemotaxis of Pseudomonas sp. strain WBC-3 toward aromatic compounds JO - J Envriron Sci VL - 20 UR - https://doi.org/10.1016/S1001-0742(08)62215-9 DO - 10.1016/S1001-0742(08)62215-9 ID - Zhang2008 ER - TY - JOUR AU - Pandey, J. AU - Sharma, N. K. AU - Khan, F. AU - Ghosh, A. AU - Oakeshott, J. G. AU - Jain, R. K. AU - Pandey, G. PY - 2012 DA - 2012// TI - Chemotaxis of Burkholderia sp. Strain SJ98 towards chloronitroaromatic compounds that it can metabolise JO - BMC Microbiol VL - 12 UR - https://doi.org/10.1186/1471-2180-12-19 DO - 10.1186/1471-2180-12-19 ID - Pandey2012 ER - TY - JOUR AU - Min, J. AU - Wang, B. AU - Hu, X. PY - 2017 DA - 2017// TI - Effect of inoculation of Burkholderia sp. strain SJ98 on bacterial community dynamics and para -nitrophenol, 3-methyl-4-nitrophenol, and 2-chloro-4-nitrophenol degradation in soil JO - Sci Rep VL - 7 UR - https://doi.org/10.1038/s41598-017-06436-0 DO - 10.1038/s41598-017-06436-0 ID - Min2017 ER - TY - JOUR AU - Liu, X. AU - Parales, R. E. PY - 2009 DA - 2009// TI - Bacterial chemotaxis to atrazine and related s-triazines JO - Appl Environ Microbiol VL - 75 UR - https://doi.org/10.1128/AEM.01030-09 DO - 10.1128/AEM.01030-09 ID - Liu2009 ER - TY - JOUR AU - Iwaki, H. AU - Muraki, T. AU - Ishihara, S. AU - Hasegawa, Y. AU - Rankin, K. N. AU - Sulea, T. AU - Boyd, J. AU - Lau, P. C. K. PY - 2007 DA - 2007// TI - Characterization of a pseudomonad 2-nitrobenzoate nitroreductase and its catabolic pathway-associated 2-hydroxylaminobenzoate mutase and a chemoreceptor involved in 2-nitrobenzoate chemotaxis JO - J Bacteriol VL - 189 UR - https://doi.org/10.1128/JB.01098-06 DO - 10.1128/JB.01098-06 ID - Iwaki2007 ER - TY - JOUR AU - Grimm, A. C. AU - Harwood, C. S. PY - 1999 DA - 1999// TI - NahY, a catabolic plasmid-encoded receptor required for chemotaxis of Pseudomonas putida to the aromatic hydrocarbon naphthalene JO - J Bacteriol VL - 181 UR - https://doi.org/10.1128/JB.181.10.3310-3316.1999 DO - 10.1128/JB.181.10.3310-3316.1999 ID - Grimm1999 ER - TY - JOUR AU - Gordillo, F. AU - Chávez, F. P. AU - Jerez, C. A. PY - 2007 DA - 2007// TI - Motility and chemotaxis of Pseudomonas sp. B4 towards polychlorobiphenyls and chlorobenzoates JO - FEMS Microbiol Ecol VL - 60 UR - https://doi.org/10.1111/j.1574-6941.2007.00293.x DO - 10.1111/j.1574-6941.2007.00293.x ID - Gordillo2007 ER - TY - JOUR AU - Wu, G. AU - Feng, Y. AU - Boyd, S. A. PY - 2003 DA - 2003// TI - Characterization of bacteria capable of degrading soil-sorbed biphenyl JO - Bull Environ Contam Toxicol VL - 71 UR - https://doi.org/10.1007/s00128-003-0198-7 DO - 10.1007/s00128-003-0198-7 ID - Wu2003 ER - TY - JOUR AU - Furukawa, K. AU - Miyazaki, T. PY - 1986 DA - 1986// TI - Cloning of a gene cluster encoding biphenyl and chlorobiphenyl degradation in Pseudomonas pseudoalcaligenes JO - J Bacteriol VL - 166 UR - https://doi.org/10.1128/JB.166.2.392-398.1986 DO - 10.1128/JB.166.2.392-398.1986 ID - Furukawa1986 ER - TY - JOUR AU - Vangnai, A. S. AU - Takeuchi, K. AU - Oku, S. AU - Kataoka, N. AU - Nitisakulkan, T. AU - Tajima, T. AU - Kato, J. PY - 2013 DA - 2013// TI - Identification of CtpL as a chromosomally encoded chemoreceptor for 4-chloroaniline and catechol in Pseudomonas aeruginosa PAO1 JO - Appl Environ Microbiol VL - 79 UR - https://doi.org/10.1128/AEM.02428-13 DO - 10.1128/AEM.02428-13 ID - Vangnai2013 ER - TY - JOUR AU - Wu, Y. AU - Zaiden, N. AU - Cao, B. PY - 2018 DA - 2018// TI - The core- and pan-genomic analyses of the genus Comamonas: from environmental adaptation to potential virulence JO - Front Microbiol UR - https://doi.org/10.3389/fmicb.2018.03096 DO - 10.3389/fmicb.2018.03096 ID - Wu2018 ER - TY - JOUR AU - Andreoni, V. AU - Gianfreda, L. PY - 2007 DA - 2007// TI - Bioremediation and monitoring of aromatic-polluted habitats JO - Appl Microbiol Biotechnol VL - 76 UR - https://doi.org/10.1007/s00253-007-1018-5 DO - 10.1007/s00253-007-1018-5 ID - Andreoni2007 ER - TY - JOUR AU - Huang, Z. AU - Wang, Y. -. H. AU - Zhu, H. -. Z. AU - Andrianova, E. P. AU - Jiang, C. -. Y. AU - Li, D. AU - Ma, L. AU - Feng, J. AU - Liu, Z. -. P. AU - Xiang, H. AU - Zhulin, I. B. AU - Liu, S. -. J. PY - 2019 DA - 2019// TI - Cross talk between chemosensory pathways that modulate chemotaxis and biofilm formation JO - mBio VL - 10 UR - https://doi.org/10.1128/mBio.02876-18 DO - 10.1128/mBio.02876-18 ID - Huang2019 ER - TY - JOUR AU - Tang, Q. AU - Lu, T. AU - Liu, S. -. J. PY - 2018 DA - 2018// TI - Developing a synthetic biology toolkit for Comamonas testosteroni, an emerging cellular chassis for bioremediation JO - ACS Synth Biol VL - 7 UR - https://doi.org/10.1021/acssynbio.7b00430 DO - 10.1021/acssynbio.7b00430 ID - Tang2018 ER - TY - JOUR AU - Vítková, M. AU - Dercová, K. AU - Molnárová, J. AU - Tóthová, L. AU - Polek, B. AU - Godočíková, J. PY - 2011 DA - 2011// TI - The effect of lignite and comamonas testosteroni on pentachlorophenol biodegradation and soil ecotoxicity JO - Water Air Soil Pollut VL - 218 UR - https://doi.org/10.1007/s11270-010-0630-7 DO - 10.1007/s11270-010-0630-7 ID - Vítková2011 ER - TY - JOUR AU - Martino, C. AU - López, N. I. AU - Raiger Iustman, L. J. PY - 2012 DA - 2012// TI - Isolation and characterization of benzene, toluene and xylene degrading Pseudomonas sp. selected as candidates for bioremediation JO - Int Biodeterior Biodegrad VL - 67 UR - https://doi.org/10.1016/j.ibiod.2011.11.004 DO - 10.1016/j.ibiod.2011.11.004 ID - Martino2012 ER - TY - JOUR AU - Hendrickx, B. AU - Junca, H. AU - Vosahlova, J. AU - Lindner, A. AU - Rüegg, I. AU - Bucheli-Witschel, M. AU - Faber, F. AU - Egli, T. AU - Mau, M. AU - Schlömann, M. AU - Brennerova, M. AU - Vl, B. r. e. n. n. e. r. AU - Pieper, D. H. AU - Top, E. M. AU - Dejonghe, W. AU - Bastiaens, L. AU - Springael, D. PY - 2006 DA - 2006// TI - Alternative primer sets for PCR detection of genotypes involved in bacterial aerobic BTEX degradation: distribution of the genes in BTEX degrading isolates and in subsurface soils of a BTEX contaminated industrial site JO - J Microbiol Methods VL - 64 UR - https://doi.org/10.1016/j.mimet.2005.04.018 DO - 10.1016/j.mimet.2005.04.018 ID - Hendrickx2006 ER - TY - BOOK AU - Lee, E. Y. AU - Hong, S. H. AU - Oh, M. H. AU - Lim, J. S. PY - 2011 DA - 2011// TI - Characterization biodegradation of benzene, toluene, ethylbenzene, and xylenes by the newly isolated bacterium Pseudomonas putida AY-10 in rhizosphere of wastewater treatment reed PB - IACSIT Press CY - Singapore ID - Lee2011 ER - TY - JOUR AU - Koutinas, M. AU - Lam, M. -. C. AU - Kiparissides, A. AU - Silva-Rocha, R. AU - Godinho, M. AU - Livingston, A. G. AU - Pistikopoulos, E. N. AU - Lorenzo, V. AU - Santos, V. A. P. M. AU - Mantalaris, A. PY - 2010 DA - 2010// TI - The regulatory logic of m-xylene biodegradation by Pseudomonas putida mt-2 exposed by dynamic modelling of the principal node Ps/Pr of the TOL plasmid JO - Environ Microbiol VL - 12 UR - https://doi.org/10.1111/j.1462-2920.2010.02245.x DO - 10.1111/j.1462-2920.2010.02245.x ID - Koutinas2010 ER - TY - JOUR AU - Otenio, M. H. AU - Silva, M. T. L. AU - Marques, M. L. O. AU - Roseiro, J. C. AU - Bidoia, E. D. PY - 2005 DA - 2005// TI - Benzene, toluene and xylene biodegradation by Pseudomonas putida CCMI 852 JO - Braz J Microbiol VL - 36 UR - https://doi.org/10.1590/S1517-83822005000300010 DO - 10.1590/S1517-83822005000300010 ID - Otenio2005 ER - TY - JOUR AU - Arenghi, F. L. G. AU - Barbieri, P. AU - Bertoni, G. AU - Lorenzo, V. PY - 2001 DA - 2001// TI - New insights into the activation of o-xylene biodegradation in Pseudomonas stutzeri OX1 by pathway substrates JO - EMBO Rep VL - 2 UR - https://doi.org/10.1093/embo-reports/kve092 DO - 10.1093/embo-reports/kve092 ID - Arenghi2001 ER - TY - JOUR AU - Dobslaw, D. AU - Engesser, K. -. H. PY - 2015 DA - 2015// TI - Degradation of toluene by ortho cleavage enzymes in Burkholderia fungorum FLU100 JO - Microb Biotechnol VL - 8 UR - https://doi.org/10.1111/1751-7915.12147 DO - 10.1111/1751-7915.12147 ID - Dobslaw2015 ER - TY - JOUR AU - Millacura, F. A. AU - Cárdenas, F. AU - Mendez, V. AU - Seeger, M. AU - Rojas, L. A. PY - 2017 DA - 2017// TI - Degradation of benzene by the heavy-metal resistant bacterium Cupriavidus metallidurans CH34 reveals its catabolic potential for aromatic compounds JO - bioRxiv UR - https://doi.org/10.1101/164517 DO - 10.1101/164517 ID - Millacura2017 ER - TY - JOUR AU - Qu, D. AU - Zhao, Y. AU - Sun, J. AU - Ren, H. AU - Zhou, R. PY - 2015 DA - 2015// TI - BTEX biodegradation and its nitrogen removal potential by a newly isolated Pseudomonas thivervalensis MAH1 JO - Can J Microbiol VL - 61 UR - https://doi.org/10.1139/cjm-2015-0152 DO - 10.1139/cjm-2015-0152 ID - Qu2015 ER - TY - JOUR AU - Nichols, N. N. AU - Lunde, T. A. AU - Graden, K. C. AU - Hallock, K. A. AU - Kowalchyk, C. K. AU - Southern, R. M. AU - Soskin, E. J. AU - Ditty, J. L. PY - 2012 DA - 2012// TI - Chemotaxis to furan compounds by furan-degrading pseudomonas strains JO - Appl Environ Microbiol VL - 78 UR - https://doi.org/10.1128/AEM.01104-12 DO - 10.1128/AEM.01104-12 ID - Nichols2012 ER - TY - JOUR AU - Parales, R. E. PY - 2004 DA - 2004// TI - Nitrobenzoates and aminobenzoates are chemoattractants for Pseudomonas strains JO - Appl Environ Microbiol VL - 70 UR - https://doi.org/10.1128/AEM.70.1.285-292.2004 DO - 10.1128/AEM.70.1.285-292.2004 ID - Parales2004 ER - TY - JOUR AU - Rabinovitch-Deere, C. A. AU - Parales, R. E. PY - 2012 DA - 2012// TI - Three types of taxis used in the response of Acidovorax sp. strain JS42 to 2-nitrotoluene JO - Appl Environ Microbiol VL - 78 UR - https://doi.org/10.1128/AEM.07183-11 DO - 10.1128/AEM.07183-11 ID - Rabinovitch-Deere2012 ER - TY - JOUR AU - Arora, P. K. AU - Bae, H. PY - 2014 DA - 2014// TI - Biotransformation and chemotaxis of 4-chloro-2-nitrophenol by Pseudomonas sp. JHN JO - Microb Cell Fact UR - https://doi.org/10.1186/s12934-014-0110-7 DO - 10.1186/s12934-014-0110-7 ID - Arora2014 ER - TY - JOUR AU - Arora, P. K. AU - Srivastava, A. AU - Singh, V. P. PY - 2014 DA - 2014// TI - Degradation of 4-chloro-3-nitrophenol via a novel intermediate, 4-chlororesorcinol by Pseudomonas sp. JHN JO - Sci Rep VL - 4 UR - https://doi.org/10.1038/srep04475 DO - 10.1038/srep04475 ID - Arora2014 ER - TY - JOUR AU - Tremaroli, V. AU - Vacchi Suzzi, C. AU - Fedi, S. AU - Ceri, H. AU - Zannoni, D. AU - Turner, R. J. PY - 2010 DA - 2010// TI - Tolerance of Pseudomonas pseudoalcaligenes KF707 to metals, polychlorobiphenyls and chlorobenzoates: effects on chemotaxis-, biofilm- and planktonic-grown cells JO - FEMS Microbiol Ecol VL - 74 UR - https://doi.org/10.1111/j.1574-6941.2010.00965.x DO - 10.1111/j.1574-6941.2010.00965.x ID - Tremaroli2010 ER - TY - JOUR AU - Grimm, A. C. AU - Harwood, C. S. PY - 1997 DA - 1997// TI - Chemotaxis of Pseudomonas spp. to the polyaromatic hydrocarbon naphthalene JO - Appl Environ Microbiol VL - 63 UR - https://doi.org/10.1128/AEM.63.10.4111-4115.1997 DO - 10.1128/AEM.63.10.4111-4115.1997 ID - Grimm1997 ER - TY - JOUR AU - Samanta, S. K. AU - Jain, R. K. PY - 2000 DA - 2000// TI - Evidence for plasmid-mediated chemotaxis of Pseudomonas putida towards naphthalene and salicylate JO - Can J Microbiol VL - 46 UR - https://doi.org/10.1139/cjm-46-1-1 DO - 10.1139/cjm-46-1-1 ID - Samanta2000 ER - TY - JOUR AU - Ortega-Calvo, J. J. AU - Marchenko, A. I. AU - Vorobyov, A. V. AU - Borovick, R. V. PY - 2003 DA - 2003// TI - Chemotaxis in polycyclic aromatic hydrocarbon-degrading bacteria isolated from coal-tar- and oil-polluted rhizospheres JO - FEMS Microbiol Ecol VL - 44 UR - https://doi.org/10.1016/S0168-6496(03)00092-8 DO - 10.1016/S0168-6496(03)00092-8 ID - Ortega-Calvo2003 ER - TY - JOUR AU - Bisht, S. AU - Pandey, P. AU - Sood, A. AU - Sharma, S. AU - Bisht, N. S. PY - 2010 DA - 2010// TI - Biodegradation of naphthalene and anthracene by chemo-tactically active rhizobacteria of populus deltoides JO - Braz J Microbiol VL - 41 UR - https://doi.org/10.1590/S1517-83822010000400011 DO - 10.1590/S1517-83822010000400011 ID - Bisht2010 ER - TY - JOUR AU - Gasperotti, A. F. AU - Revuelta, M. V. AU - Studdert, C. A. AU - Herrera Seitz, M. K. PY - 2018 DA - 2018// TI - Identification of two different chemosensory pathways in representatives of the genus Halomonas JO - BMC Genomics VL - 19 UR - https://doi.org/10.1186/s12864-018-4655-4 DO - 10.1186/s12864-018-4655-4 ID - Gasperotti2018 ER - TY - JOUR AU - Corti Monzón, G. AU - Nisenbaum, M. AU - Herrera Seitz, M. K. AU - Murialdo, S. E. PY - 2018 DA - 2018// TI - New findings on aromatic compounds’ degradation and their metabolic pathways, the biosurfactant production and motility of the halophilic bacterium Halomonas sp. KHS3 JO - Curr Microbiol VL - 75 UR - https://doi.org/10.1007/s00284-018-1497-x DO - 10.1007/s00284-018-1497-x ID - Corti Monzón2018 ER - TY - JOUR AU - Ehrenhauser, F. S. PY - 2015 DA - 2015// TI - PAH and IUPAC nomenclature JO - Polycyclic Aromat Compd VL - 35 UR - https://doi.org/10.1080/10406638.2014.918551 DO - 10.1080/10406638.2014.918551 ID - Ehrenhauser2015 ER - TY - BOOK AU - Fletcher, J. H. AU - Dermer, O. C. AU - Fox, R. B. PY - 1974 DA - 1974// TI - Polycyclic aromatic hydrocarbons. Nomenclature of organic compounds PB - American Chemical Society CY - Washington ID - Fletcher1974 ER - TY - BOOK PY - 1983 DA - 1983// TI - Polycyclic aromatic hydrocarbons: evaluation of sources and effects PB - The National Academies Press CY - Washington ID - ref126 ER - TY - JOUR AU - Shrestha, R. A. AU - Pham, T. D. AU - Sillanpää, M. PY - 2010 DA - 2010// TI - Electro ultrasonic remediation of polycyclic aromatic hydrocarbons from contaminated soil JO - J Appl Electrochem VL - 40 UR - https://doi.org/10.1007/s10800-010-0117-7 DO - 10.1007/s10800-010-0117-7 ID - Shrestha2010 ER - TY - JOUR AU - Gai, C. AU - Dong, Y. AU - Yang, S. AU - Zhang, Z. AU - Liang, J. AU - Li, J. PY - 2016 DA - 2016// TI - Thermal decomposition kinetics of light polycyclic aromatic hydrocarbons as surrogate biomass tar JO - RSC Adv VL - 6 UR - https://doi.org/10.1039/C6RA15513H DO - 10.1039/C6RA15513H ID - Gai2016 ER - TY - JOUR AU - Melnyk, A. AU - Dettlaff, A. AU - Kuklińska, K. AU - Namieśnik, J. AU - Wolska, L. PY - 2015 DA - 2015// TI - Concentration and sources of polycyclic aromatic hydrocarbons (PAHs) and polychlorinated biphenyls (PCBs) in surface soil near a municipal solid waste (MSW) landfill JO - Sci Total Environ VL - 530–531 UR - https://doi.org/10.1016/j.scitotenv.2015.05.092 DO - 10.1016/j.scitotenv.2015.05.092 ID - Melnyk2015 ER - TY - JOUR AU - Rao, K. J. AU - Ghosh Chaudhuri, R. AU - Paria, S. PY - 2014 DA - 2014// TI - Naphthalene degradation in the presence of natural–synthetic surfactants mixture by mixed bacterial cultures JO - J Environ Chem Eng VL - 2 UR - https://doi.org/10.1016/j.jece.2014.02.011 DO - 10.1016/j.jece.2014.02.011 ID - Rao2014 ER - TY - JOUR AU - Sylian, R. o. d. r. i. g. u. e. z. AU - Bishop, P. a. u. l. L. PY - 2008 DA - 2008// TI - Enhancing the biodegradation of polycyclic aromatic hydrocarbons: effects of nonionic surfactant addition on biofilm function and structure JO - J Environ Eng VL - 134 UR - https://doi.org/10.1061/(ASCE)0733-9372(2008)134:7(505) DO - 10.1061/(ASCE)0733-9372(2008)134:7(505) ID - Sylian2008 ER - TY - JOUR AU - Li, J. AU - Luo, C. AU - Song, M. AU - Dai, Q. AU - Jiang, L. AU - Zhang, D. AU - Zhang, G. PY - 2017 DA - 2017// TI - Biodegradation of phenanthrene in polycyclic aromatic hydrocarbon-contaminated wastewater revealed by coupling cultivation-dependent and -independent approaches JO - Environ Sci Technol VL - 51 UR - https://doi.org/10.1021/acs.est.6b04366 DO - 10.1021/acs.est.6b04366 ID - Li2017 ER - TY - JOUR AU - Gran-Scheuch, A. AU - Fuentes, E. AU - Bravo, D. M. AU - Jiménez, J. C. AU - Pérez-Donoso, J. M. PY - 2017 DA - 2017// TI - Isolation and characterization of phenanthrene degrading bacteria from diesel fuel-contaminated antarctic soils JO - Front Microbiol UR - https://doi.org/10.3389/fmicb.2017.01634 DO - 10.3389/fmicb.2017.01634 ID - Gran-Scheuch2017 ER - TY - JOUR AU - Lawal, A. T. PY - 2017 DA - 2017// TI - Polycyclic aromatic hydrocarbons. A review JO - Cogent Environ Sci VL - 3 UR - https://doi.org/10.1080/23311843.2017.1339841 DO - 10.1080/23311843.2017.1339841 ID - Lawal2017 ER - TY - JOUR AU - Barathi, S. AU - Vasudevan, N. PY - 2001 DA - 2001// TI - Utilization of petroleum hydrocarbons by Pseudomonas fluorescens isolated from a petroleum-contaminated soil JO - Environ Int VL - 26 UR - https://doi.org/10.1016/S0160-4120(01)00021-6 DO - 10.1016/S0160-4120(01)00021-6 ID - Barathi2001 ER - TY - JOUR AU - Kanaly, R. A. AU - Harayama, S. PY - 2000 DA - 2000// TI - Biodegradation of high-molecular-weight polycyclic aromatic hydrocarbons by bacteria JO - J Bacteriol VL - 182 UR - https://doi.org/10.1128/JB.182.8.2059-2067.2000 DO - 10.1128/JB.182.8.2059-2067.2000 ID - Kanaly2000 ER - TY - JOUR AU - Dutta, K. AU - Shityakov, S. AU - Khalifa, I. AU - Ballav, S. AU - Jana, D. AU - Manna, T. AU - Karmakar, M. AU - Raul, P. AU - Guchhait, K. C. AU - Ghosh, C. PY - 2019 DA - 2019// TI - Enhanced biodegradation of naphthalene by Pseudomonas sp. consortium immobilized in calcium alginate beads JO - bioRxiv UR - https://doi.org/10.1101/631135 DO - 10.1101/631135 ID - Dutta2019 ER - TY - JOUR AU - Gao, S. AU - Seo, J. -. S. AU - Wang, J. AU - Keum, Y. -. S. AU - Li, J. AU - Li, Q. X. PY - 2013 DA - 2013// TI - Multiple degradation pathways of phenanthrene by Stenotrophomonas maltophilia C6 JO - Int Biodeterior Biodegrad VL - 79 UR - https://doi.org/10.1016/j.ibiod.2013.01.012 DO - 10.1016/j.ibiod.2013.01.012 ID - Gao2013 ER - TY - JOUR AU - Nayak, A. S. AU - Sanjeev Kumar, S. AU - Santosh Kumar, M. AU - Anjaneya, O. AU - Karegoudar, T. B. PY - 2011 DA - 2011// TI - A catabolic pathway for the degradation of chrysene by Pseudoxanthomonas sp. PNK-04 JO - FEMS Microbiol Lett VL - 320 UR - https://doi.org/10.1111/j.1574-6968.2011.02301.x DO - 10.1111/j.1574-6968.2011.02301.x ID - Nayak2011 ER - TY - JOUR AU - Xu, J. AU - Wu, X. AU - Wang, H. AU - Dekang, K. AU - Liu, Z. PY - 2018 DA - 2018// TI - Metabolic pathways of polycyclic aromatic hydrocarbons and functional regulation of proteins JO - Mini-Rev Org Chem VL - 15 UR - https://doi.org/10.2174/1570193X14666170721150147 DO - 10.2174/1570193X14666170721150147 ID - Xu2018 ER - TY - JOUR AU - Pedit, J. A. AU - Marx, R. B. AU - Miller, C. T. AU - Aitken, M. D. PY - 2002 DA - 2002// TI - Quantitative analysis of experiments on bacterial chemotaxis to naphthalene JO - Biotechol Bioeng VL - 78 UR - https://doi.org/10.1002/bit.10244 DO - 10.1002/bit.10244 ID - Pedit2002 ER - TY - JOUR AU - Law, A. M. J. AU - Aitken, M. D. PY - 2003 DA - 2003// TI - Bacterial chemotaxis to naphthalene desorbing from a nonaqueous liquid JO - Appl Environ Microbiol VL - 69 UR - https://doi.org/10.1128/aem.69.10.5968-5973.2003 DO - 10.1128/aem.69.10.5968-5973.2003 ID - Law2003 ER - TY - JOUR AU - Hanzel, J. AU - Harms, H. AU - Wick, L. Y. PY - 2010 DA - 2010// TI - Bacterial chemotaxis along vapor-phase gradients of naphthalene JO - Environ Sci Technol VL - 44 UR - https://doi.org/10.1021/es100776h DO - 10.1021/es100776h ID - Hanzel2010 ER - TY - CHAP AU - Malloggi, F. ED - Lang, P. ED - Liu, Y. PY - 2016 DA - 2016// TI - Microfluidics: from basic principles to applications BT - Soft matter at aqueous interfaces PB - Springer International Publishing CY - Cham UR - https://doi.org/10.1007/978-3-319-24502-7_16 DO - 10.1007/978-3-319-24502-7_16 ID - Malloggi2016 ER - TY - JOUR AU - Mao, H. AU - Cremer, P. S. AU - Manson, M. D. PY - 2003 DA - 2003// TI - A sensitive, versatile microfluidic assay for bacterial chemotaxis JO - Proc Natl Acad Sci USA VL - 100 UR - https://doi.org/10.1073/pnas.0931258100 DO - 10.1073/pnas.0931258100 ID - Mao2003 ER - TY - JOUR AU - Lanning, L. M. AU - Ford, R. M. AU - Long, T. PY - 2008 DA - 2008// TI - Bacterial chemotaxis transverse to axial flow in a microfluidic channel JO - Biotechnol Bioeng VL - 100 UR - https://doi.org/10.1002/bit.21814 DO - 10.1002/bit.21814 ID - Lanning2008 ER - TY - JOUR AU - Long, T. AU - Ford, R. M. PY - 2009 DA - 2009// TI - Enhanced transverse migration of bacteria by chemotaxis in a porous T-sensor JO - Environ Sci Technol VL - 43 UR - https://doi.org/10.1021/es802558j DO - 10.1021/es802558j ID - Long2009 ER - TY - JOUR AU - Stocker, R. AU - Seymour, J. R. AU - Samadani, A. AU - Hunt, D. E. AU - Polz, M. F. PY - 2008 DA - 2008// TI - Rapid chemotactic response enables marine bacteria to exploit ephemeral microscale nutrient patches JO - PNAS VL - 105 UR - https://doi.org/10.1073/pnas.0709765105 DO - 10.1073/pnas.0709765105 ID - Stocker2008 ER - TY - BOOK AU - Lin, B. AU - Qin, J. PY - 2008 DA - 2008// TI - Laboratory on a microfluidic chip PB - Science Press CY - Beijing ID - Lin2008 ER - TY - JOUR AU - Zang, X. -. Q. AU - Li, Z. -. Y. AU - Zhang, X. -. Y. AU - Jiang, L. AU - Ren, N. -. Q. AU - Sun, K. PY - 2017 DA - 2017// TI - Advance in bacteria chemotaxis on microfluidic devices JO - Chin J Anal Chem VL - 45 UR - https://doi.org/10.1016/S1872-2040(17)61050-8 DO - 10.1016/S1872-2040(17)61050-8 ID - Zang2017 ER - TY - JOUR AU - Jeong, H. -. H. AU - Lee, S. -. H. AU - Kim, J. -. M. AU - Kim, H. -. E. AU - Kim, Y. -. G. AU - Yoo, J. Y. AU - Chang, W. -. S. AU - Lee, C. -. S. PY - 2010 DA - 2010// TI - Microfluidic monitoring of Pseudomonas aeruginosa chemotaxis under the continuous chemical gradient JO - Biosens Bioelectron VL - 26 UR - https://doi.org/10.1016/j.bios.2010.08.006 DO - 10.1016/j.bios.2010.08.006 ID - Jeong2010 ER - TY - STD TI - Baranger C, Creusot L, Sun X, Pezron I, Goff AL, Fayeulle A (2018) Microfluidic approaches for improved bioremediation: monitoring pollutant uptake in a soil fungus. In: Proceedings of the 4th World Congress on New Technologies (NewTech’18). Madrid, Spain. https://doi.org/10.11159/icepr18.184. ID - ref152 ER - TY - JOUR AU - Vilela, D. AU - Parmar, J. AU - Zeng, Y. AU - Zhao, Y. AU - Sánchez, S. PY - 2016 DA - 2016// TI - Graphene-based microbots for toxic heavy metal removal and recovery from water JO - Nano Lett VL - 16 UR - https://doi.org/10.1021/acs.nanolett.6b00768 DO - 10.1021/acs.nanolett.6b00768 ID - Vilela2016 ER - TY - JOUR AU - Yew, M. AU - Ren, Y. AU - Koh, K. S. AU - Sun, C. AU - Snape, C. PY - 2018 DA - 2018// TI - A review of state-of-the-art microfluidic technologies for environmental applications: detection and remediation JO - Glob Chall UR - https://doi.org/10.1002/gch2.201800060 DO - 10.1002/gch2.201800060 ID - Yew2018 ER - TY - JOUR AU - Yu, F. B. AU - Blainey, P. C. AU - Schulz, F. AU - Woyke, T. AU - Horowitz, M. A. AU - Quake, S. R. PY - 2017 DA - 2017// TI - Microfluidic-based mini-metagenomics enables discovery of novel microbial lineages from complex environmental samples JO - bioRxiv UR - https://doi.org/10.1101/114496 DO - 10.1101/114496 ID - Yu2017 ER - TY - JOUR AU - Davidov, T. AU - Granik, N. AU - Zahran, S. AU - Leonard, H. AU - Adir, I. AU - Elul, O. AU - Fried, T. AU - Gil, A. AU - Mayo, B. AU - Ohayon, S. AU - Sarig, S. AU - Shasha, N. AU - Tsedef, S. AU - Weiner, S. AU - Brunwasser-Meirom, M. AU - Ereskovsky, A. AU - Katz, N. AU - Kaufmann, B. AU - Haimov, Y. AU - Segal, E. AU - Amit, R. PY - 2019 DA - 2019// TI - Designing bacterial chemotactic receptors guided by photonic femtoliter well arrays for quantifiable, label-free measurement of bacterial chemotaxis JO - ACS Biomater Sci Eng VL - 5 UR - https://doi.org/10.1021/acsbiomaterials.8b01429 DO - 10.1021/acsbiomaterials.8b01429 ID - Davidov2019 ER - TY - JOUR AU - Luu, R. A. AU - Schomer, R. A. AU - Brunton, C. N. AU - Truong, R. AU - Ta, A. P. AU - Tan, W. A. AU - Parales, J. V. AU - Wang, Y. -. J. AU - Huo, Y. -. W. AU - Liu, S. -. J. AU - Ditty, J. L. AU - Stewart, V. AU - Parales, R. E. PY - 2019 DA - 2019// TI - Hybrid two-component sensors for identification of bacterial chemoreceptor function JO - Appl Environ Microbiol UR - https://doi.org/10.1128/AEM.01626-19 DO - 10.1128/AEM.01626-19 ID - Luu2019 ER -