Table 4 Significant biological processes and molecular function categories targeted by differentially expressed microRNAs (miRNAs) in insecticide expressing Bt GM maize plants
From: Systematic miRNome profiling reveals differential microRNAs in transgenic maize metabolism
GO ID | Term description | Number of transcripts | FDR |
|---|---|---|---|
Biological processes | |||
 GO:0032774 | RNA biosynthetic process | 22 | 1.80E−11 |
 GO:0006351 | Transcription, DNA-dependent | 22 | 1.80E−11 |
 GO:0051252 | Regulation of RNA metabolic process | 21 | 2.40E−11 |
 GO:0006355 | Regulation of transcription, DNA-dependent | 21 | 2.40E−11 |
 GO:0016070 | RNA metabolic process | 23 | 2.10E−10 |
 GO:0031326 | Regulation of cellular biosynthetic process | 21 | 2.00E−08 |
 GO:0045449 | Regulation of transcription | 21 | 2.00E−08 |
 GO:0019219 | Regulation of nucleobase metabolic process | 21 | 2.00E−08 |
 GO:0009889 | Regulation of biosynthetic process | 21 | 2.00E−08 |
 GO:0051171 | Regulation of nitrogen compound metabolic process | 21 | 2.00E−08 |
 GO:0010556 | Regulation of macromolecule biosynthetic process | 21 | 2.00E−08 |
 GO:0006350 | Transcription | 22 | 2.00E−08 |
 GO:0010468 | Regulation of gene expression | 21 | 2.10E−08 |
 GO:0031323 | Regulation of cellular metabolic process | 21 | 2.20E−08 |
 GO:0080090 | Regulation of primary metabolic process | 21 | 4.40E−08 |
 GO:0060255 | Regulation of macromolecule metabolic process | 21 | 4.90E−08 |
 GO:0019222 | Regulation of metabolic process | 21 | 5.40E−08 |
 GO:0050794 | Regulation of cellular process | 22 | 1.40E−07 |
 GO:0050789 | Regulation of biological process | 22 | 3.40E−07 |
 GO:0010467 | Gene expression | 25 | 7.80E−07 |
 GO:0034645 | Cellular macromolecule biosynthetic process | 24 | 3.10E−06 |
 GO:0009059 | Macromolecule biosynthetic process | 24 | 3.10E−06 |
 GO:0006807 | Nitrogen compound metabolic process | 25 | 8.80E−06 |
 GO:0006139 | Nucleobase | 23 | 8.80E−06 |
 GO:0065007 | Biological regulation | 23 | 1.90E−05 |
 GO:0009058 | Biosynthetic process | 26 | 3.20E−05 |
 GO:0044249 | Cellular biosynthetic process | 24 | 0.00013 |
 GO:0043170 | Macromolecule metabolic process | 30 | 0.0022 |
 GO:0044260 | Cellular macromolecule metabolic process | 27 | 0.0037 |
 GO:0044238 | Primary metabolic process | 34 | 0.0046 |
 GO:0044237 | Cellular metabolic process | 31 | 0.0084 |
Molecular functions | |||
 GO:0003677 | DNA binding | 35 | 3.00E−16 |
 GO:0003700 | Transcription factor activity | 21 | 2.40E−15 |
 GO:0003676 | Nucleic acid binding | 41 | 4.00E−15 |
 GO:0030528 | Transcription regulator activity | 22 | 1.10E−12 |
 GO:0005488 | Binding | 49 | 0.00041 |