Table 1 Number of reads aligned to each sequence type for each of the four varieties used in the study
From: Systematic miRNome profiling reveals differential microRNAs in transgenic maize metabolism
Sequence type | RR | Bt | RR×Bt | Control | ||||
|---|---|---|---|---|---|---|---|---|
Total reads | % | Total reads | % | Total reads | % | Total reads | % | |
snoRNA | 1365 | 0.02 | 797 | 0.01 | 1454 | 0.02 | 1247 | 0.02 |
snRNA | 7922 | 0.09 | 2989 | 0.04 | 3514 | 0.04 | 7937 | 0.10 |
tRNA | 244,114 | 2.75 | 83,806 | 1.01 | 152,588 | 1.79 | 178,399 | 2.22 |
rRNA | 1,710,288 | 19.30 | 2,003,376 | 24.09 | 1,568,675 | 18.38 | 1,528,139 | 19.01 |
cpRNA | 1,724,918 | 19.47 | 1,100,942 | 13.24 | 1,531,116 | 17.94 | 1,526,939 | 19.00 |
mtRNA | 53,568 | 0.60 | 48,856 | 0.59 | 69,729 | 0.82 | 64,551 | 0.80 |
Transgenic RNA | 476 | 0.01 | 4,173 | 0.05 | 4908 | 0.06 | – | – |
miRNA | 4,10,396 | 4.63 | 4,62,865 | 5.57 | 445,291 | 5.22 | 384,181 | 4.78 |
Other sRNAs | 4,708,056 | 53.13 | 4,606,799 | 55.41 | 4,755,858 | 55.73 | 4,346,399 | 54.07 |